BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917547
Length=1977
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58300.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3234 0.0
> AT5G58300.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:23571879-23575084 FORWARD LENGTH=2387
Length=2387
Score = 3234 bits (1751), Expect = 0.0
Identities = 1902/1977 (96%), Gaps = 2/1977 (0%)
Strand=Plus/Plus
Query 1 ATGATGCAGCTCCATTTCCAGATTTATGTTGGTCCAATATTTGCCTTGAGACCCTCAAAG 60
||||||||| ||||||||||| |||||||||||||| ||||| |||||||||| ||||||
Sbjct 210 ATGATGCAGTTCCATTTCCAGTTTTATGTTGGTCCAGTATTTACCTTGAGACCGTCAAAG 269
Query 61 GGGTTCTTGTCTGCTTGTCTTGTGTCTTTCTTGTTAGTCACAACTACTTTCTGCTCTTTT 120
|||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| |
Sbjct 270 GGGTTCTTGTCTACTTGTCTTGTCTCTTTCTTGTTTGTCACAACTACTTTCTGCTCTTAT 329
Query 121 GCTATTGCGGACCTGAACTCGGATAGGCAAGCTCTTCTTGCCTTTGCTGCTTCTGTTCCT 180
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 330 GCTATTGCCGACCTGAACTCGGATAGGCAAGCTCTTCTTGCATTTGCTGCTTCTGTTCCT 389
Query 181 CATCTTAGACGGCTCAACTGGAATTCCACTAACCATATCTGCAAATCATGGGTTGGCGTC 240
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 CATCTCAGACGACTCAACTGGAATTCCACTAACCATATCTGCAAATCATGGGTTGGCGTC 449
Query 241 ACCTGCACTTCTGATGGT-CTTAGTGTTCACGCTCTTCGCCTTCCGGGAATTGGACTCTT 299
|||||||||||||||||| | |||||||||||||||||||||||| |||||||| |||||
Sbjct 450 ACCTGCACTTCTGATGGTAC-TAGTGTTCACGCTCTTCGCCTTCCAGGAATTGGGCTCTT 508
Query 300 GGGACCAATCCCTCCAAACACACTTGGTAAACTAGAATCACTCAGGATTCTCAGTTTGAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GGGACCAATCCCTCCAAACACACTTGGTAAACTAGAATCACTCAGGATTCTCAGTTTGAG 568
Query 360 ATCAAACCTCCTCAGTGGTAACCTTCCTCCTGATATTCACTCTCTCCCTTCACTAGATTA 419
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 569 ATCAAACCTCCTCAGTGGTAACCTTCCTCCTGACATTCACTCTCTCCCTTCACTAGATTA 628
Query 420 CATCTTTCTACAACATAACAACTTCTCTGGTGAGGTTCCTTCCTTTGTGTCCCCACAGCT 479
||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 629 CATCTATCTCCAACATAACAACTTCTCTGGTGAGGTTCCTTCCTTTGTGTCCCGACAGCT 688
Query 480 CAATATCCTAGATCTCTCCTTTAACTCTTTCACCGGGAAGATACCAGCAACGTTCCAAAA 539
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 689 CAATATCTTAGATCTCTCATTTAACTCTTTCACCGGGAAGATACCAGCAACGTTCCAAAA 748
Query 540 TCTGAAGCAATTGACAGGGTTAAGCCTCCAAAATAACAAACTTTCTGGACCAGTACCTAA 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 749 TCTGAAGCAATTGACAGGGTTGAGCCTCCAAAATAACAAACTTTCTGGACCAGTACCTAA 808
Query 600 TCTTGATACAGTAAGTCTGAGACGGTTAAACTTGAGCAACAATCATCTTAATGGTTCAAT 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 809 TCTTGATACAGTAAGTCTGAGACGTTTAAACTTGAGCAACAATCATCTTAATGGTTCAAT 868
Query 660 ACCCTCTGCACTTGGTGGGTTTCCCAGTTCATCTTTTTCCGGAAACACATTGTTATGTGG 719
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 869 ACCCTCTGCACTTGGTGGCTTTCCCAGTTCATCTTTTTCCGGAAACACATTGTTATGTGG 928
Query 720 ACTTCCTCTGCAACCCTGTGCCATTTCCTCTCCCCCTCCTTCTCTTACCCCGCACATCTC 779
||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| ||
Sbjct 929 ACTTCCTCTGCAACCCTGTGCCACCTCCTCTCCCCCTCCTTCGCTAACCCCACACATTTC 988
Query 780 CACGCCTCCATTGCCGCCATTTCCTCACAAAGAAGGTTCAAAAAGGAAACTACATGTAAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CACGCCTCCATTGCCGCCATTTCCTCACAAAGAAGGTTCAAAAAGGAAACTACATGTAAG 1048
Query 840 CACTATCATTCCTATTGCAGCTGGTGGGGCTGCACTGCTGCTGTTAATCACCGTAGTTAT 899
|||||||||||||||||||||||| |||||||| |||||| |||| ||||||||| ||||
Sbjct 1049 CACTATCATTCCTATTGCAGCTGGAGGGGCTGCTCTGCTGTTGTTGATCACCGTAATTAT 1108
Query 900 CTTGTGTTGCTGTATCAAGAAAAAGGACAAGAGGGAAGACAGCATCGTAAAAGTAAAGAC 959
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 ATTATGCTGCTGTATCAAGAAAAAGGACAAGAGGGAAGACAGCATCGTAAAAGTAAAGAC 1168
Query 960 TTTGACTGAGAAAGCAAAGCAAGAATTTGGAAGTGGGGTGCAAGAACCTGAGAAGAATAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 TTTGACTGAGAAAGCAAAGCAAGAATTTGGAAGTGGGGTGCAAGAACCTGAGAAGAATAA 1228
Query 1020 GCTGGTGTTCTTTAATGGATGCTCCTATAACTTTGATCTAGAGGATTTGTTGAGGGCATC 1079
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 GCTGGTATTCTTTAATGGATGCTCCTATAACTTTGATCTAGAGGATTTGTTGAGGGCATC 1288
Query 1080 AGCGGAAGTACTAGGAAAAGGTAGCTATGGGACAGCATACAAGGCTGTCTTAGAGGAATC 1139
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1289 AGCAGAAGTACTAGGAAAAGGTAGCTATGGGACAGCATACAAGGCTGTGTTAGAGGAATC 1348
Query 1140 CACAACTGTTGTGGTAAAAAGGTTGAAGGAAGTGGCAGCTGGAAAGAGAGAGTTTGAACA 1199
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 1349 CACAACTGTTGTGGTAAAAAGGTTGAAAGAAGTCGCAGCTGGAAAGAGGGAGTTTGAACA 1408
Query 1200 GCAAATGGAGATTATCAGTCGGGTCGGGAACCATCCTAGCGTGGTTCCCCTCCGTGCATA 1259
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1409 GCAGATGGAGATTATCAGCCGGGTCGGGAACCATCCTAGTGTGGTTCCCCTCCGTGCATA 1468
Query 1260 TTACTACTCCAAGGATGAGAAGCTCATGGTTTGTGATTATTACTCTGCTGGTAACTTATC 1319
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1469 TTACTACTCCAAGGATGAGAAGCTCATGGTTTGTGATTATTACCCTGCTGGTAACTTATC 1528
Query 1320 ATCACTCCTCCATGGTAACCGGGGAAGTGAGAAAACGCCTCTCGACTGGGACTCCAGAGT 1379
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1529 ATCACTACTCCACGGTAACCGGGGAAGTGAGAAAACGCCTCTTGACTGGGACTCCAGAGT 1588
Query 1380 AAAAATCACACTATCAGCCGCAAAAGGTATAGCTCATCTCCATGCAGTTGGAGGTCCAAA 1439
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1589 AAAAATCACACTATCAGCGGCAAAAGGTATAGCTCATCTCCATGCAGCTGGAGGTCCAAA 1648
Query 1440 GTTCAGTCATGGAAACATAAAGTCCTCAAATGTGATTATGAAGCAGGAGAGCGATGCATG 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1649 GTTCAGTCATGGAAACATAAAGTCCTCAAATGTGATTATGAAGCAGGAGAGCGATGCGTG 1708
Query 1500 CATTTCTGACTTTGGACTGACCCCTCTGATGGCTGTGCCCATTGCTCCAATGAGGGGTGC 1559
||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1709 CATTTCTGATTTTGGACTGACCCCTCTGATGGCTGTGCCGATTGCTCCAATGAGAGGTGC 1768
Query 1560 AGGCTACCGCGCACCAGAAGTAATGGAAACAAGGAAACACACACATAAATCCGATGTTTA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 AGGCTACCGCGCACCAGAAGTAATGGAAACAAGGAAACACACACATAAATCCGATGTTTA 1828
Query 1620 CAGTTTCGGTGTACTTATACTAGAGATGTTGACTGGGAAGTCTCCAGTGCAGTCGCCAAG 1679
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1829 CAGTTTCGGTGTACTTATACTAGAGATGTTAACTGGGAAGTCTCCAGTGCAATCACCAAG 1888
Query 1680 CCGAGATGACATGGTTGATCTCCCCAGGTGGGTTCAGTCAGTTGTGAGAGAGGAATGGAC 1739
||| |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1889 CCGGGATGACATGGTTGATCTCCCGAGGTGGGTACAGTCAGTGGTGAGAGAGGAATGGAC 1948
Query 1740 AAGCGAGGTGTTTGATGTTGAGCTGATGAGGTTCCAGAACATTGAAGAAGAAATGGTACA 1799
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1949 AAGCGAGGTGTTTGATATTGAGCTGATGAGGTTTCAGAACATTGAAGAAGAAATGGTACA 2008
Query 1800 GATGCTGCAGATTGCTATGGCATGTGTAGCTCAAATGCCTGAGGTGCGACCCACCATGGA 1859
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2009 GATGCTGCAGATTGCTATGGCATGTGTAGCTCAAGTGCCTGAGGTACGACCCACCATGGA 2068
Query 1860 TGATGTCGTTAGAATGATTGAAGAGATACGAGTTTCAGACTCTGAGACCACCCGGCCATC 1919
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2069 TGATGTTGTTAGAATGATTGAAGAGATACGAGTTTCAGACTCTGAGACCACTCGGCCATC 2128
Query 1920 TTCTGATGACAATAGCAAACCCAAGGACTCCAACGTTCAAGTTCAAATCACCCCTTG 1976
||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 2129 TTCAGATGACAATAGCAAACCCAAGGACTCCAACGTCCAAGTTTAAATCACCCCTTG 2185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97941263295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5