BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917551
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58340.1 | Symbols: | myb-like HTH transcriptional regulato... 1892 0.0
> AT5G58340.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr5:23582495-23584412 FORWARD LENGTH=1626
Length=1626
Score = 1892 bits (1024), Expect = 0.0
Identities = 1245/1352 (92%), Gaps = 13/1352 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGTCATTGATCAATGGGTTGCTGAATTTATCCTCCGTCGACAACATAATCCTAGG 60
||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||||||
Sbjct 113 ATGGAGGTCATTGATCAATGGGTTGCTGAATTTTTCCTCCTTCGACAACACAATCCTAGG 172
Query 61 G-TTGCCCCTATTAATCTGATTTCGGCTCTGCAATTGGGTGATTCCTCTGACTGCATAAA 119
| || |||||||||||||||||||||| || |||| || |||||||| |||||||||||
Sbjct 173 GCTT-CCCCTATTAATCTGATTTCGGCGCTAAAATTAGGAGATTCCTCCGACTGCATAAA 231
Query 120 CCTCAAGGTATCTTCTGTCTTGCGGGATATCTCCAATTCATTGATCCGAGGTACGATCGA 179
|||||| ||||||| |||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 232 GCTCAAGATATCTTCCGTCTTGCGTGACATCTCCAATTCATTGATCCGAGGTACGATTGA 291
Query 180 TGAGGGAATGCTTGACCTTCTTGAGATTCTTGAGAAGCTTCTCTTGCAGCAACATTCGCT 239
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 292 TGAGGGAATGCTCGATCTTCTCGAGATTCTTGAGAAGCTTCTCTTGCAGCAACATTCGCT 351
Query 240 ACTCATGGAGTCTCACAAGTCTGCTTATTCCTGGACGGCTGCTGAGTGTACGCTTAGATT 299
||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 352 ACTCATGGATTCTCACAAGTCTGCTTATTGCTGGACGGCTACTGAGTGTACGCTTAGATT 411
Query 300 TATGTGGCCAATGTTTGCTTCGGATGGTTTGTTCACCGAGGCTCTTGAGAGGATATGGAC 359
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 412 TATGTGGCCAATGTTTGCTTCGGATGGTTTGTTCACCGATGCGCTTGAGAGGATATGGAC 471
Query 360 GAAGAGGATTGGGATTTTGAAGGAGAGTGGTAGCAATTTGGTGACTCATGACTTGTTGAA 419
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 472 GAAGAGGATTGGGATTTTGAAGGAGAGTGGTAGCGATTTGGTGACTTGTGACTTGTTGAA 531
Query 420 GTGGGAGACTGATTTTAACAAGGCCCTT-GAGGAACCTGAGCTCTATCAGCGAATTCGTG 478
||||||| |||||| || ||||||||| || || |||||||||||||||||||||||||
Sbjct 532 ATGGGAGAGTGATTTGAAGAAGGCCCTTGGA-GATCCTGAGCTCTATCAGCGAATTCGTG 590
Query 479 AGAGTAACATCAGGTACACTGCCATTTCCTTTCTTACTCAGCTTCTCAAAGAACAATGGG 538
||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 591 AGACTAACATCAGGTACACTGCCATTTCCTTTCTCACTCAGCTTCTCAAAGAACAGTGGG 650
Query 539 CATTACTTGGGAGTTCCTCTCTTGAATCAGTAGCTCAACGAAGGTTTCTTAAGCGCAAGA 598
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 651 CATTACTTGGGAGTTCCTCTCTTGAATCAGTAGCTCAAAGAAGGTTTCTTAAGCGCAAGG 710
Query 599 CTGTGAACGTAGAGGGTGATGTTGTTGACAACAGAGGGGATCAAAGTGCTGTTGATGAAA 658
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 711 CTGTGAACGTAGAGGGTGATGTTGTTGACAACAGAGGGGATCAAAGTGATGTTGATGAAA 770
Query 659 GCACGAGGCG-TTTGGAGAGTGACACCGTTGATGTTATCAACGA-GCAGCGT-G-G-AGG 713
||||||| || ||||| |||||| || ||||| | |||||| || |||| | | | |
Sbjct 771 GCACGAGACGTTTTGG-GAGTGATACTATTGATATCGCCAACGAGGC-GCGTGGTGAAAG 828
Query 714 GGAGGACAGGAATGGGATTAATAGAGAGAACGCTAATGATGGTGAAAGAATGGAATGTCC 773
||||||| ||||||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 829 GGAGGACGGGAATGGGATTGGTAGAGACAACGCTAATGATGGTGAAGGAATGGAATGTCT 888
Query 774 AGAGAATGATGGGATTGATAATGGGAATGCAGCAGACGAGGATCACACAATGGGTGCACA 833
|||||||||||||||||||||| |||||||||||||||||| |||||| || |||||||
Sbjct 889 GGAGAATGATGGGATTGATAATGTGAATGCAGCAGACGAGGAGCACACAGTGAGTGCACA 948
Query 834 AGAACAGGAACATGAGCCAAGTCTTGATAAGGGAGACAAAACGGTTGCTCGAGAGCTGAA 893
||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 949 AGATCAGGAACATGAGCCAAGTCTTGATAAGGGAGACGAAATGGCTGCTCGAGAGCTGAA 1008
Query 894 GGATTATTT-GTTAGAGATTCAAAGACACATCGACCCTTCCATTAGGCGAGGGGAAGAAC 952
||| ||||| | ||||||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 1009 GGAATATTTAG-TAGAGATTCAAGGACACATCGACCCTTCCACTAGGCAAGGGGAAGAAC 1067
Query 953 CTAACACTGCAATTAATCACTCAGTAGATGTCACTCCTCAGCCTACTCGGGTGAATAGGA 1012
|||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1068 CTAACAGTGCAATTGATCACTCAGTAGATGTCACTCCTCCGCCTACTCGGGTGAATAGGA 1127
Query 1013 CTGGAACACGCGGTCAAGACCATAATGAAGCAACGGATAATGTAAATGAGAAAGGTTCAG 1072
|||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 1128 CTGGAACAGGCTGTCAAGACCATAACGAAGCATCGGATAATGTAAATGAGAAAGGTTCGG 1187
Query 1073 ATAGTCAGGGAACATGGTCTAGCAGAGTTCGGCCTCGTCTACCAAGCCCAGTTCCTCTGA 1132
||||||||| ||||||||||||||||||||||||||||| ||||| ||| || ||||||
Sbjct 1188 ATAGTCAGGAAACATGGTCTAGCAGAGTTCGGCCTCGTCGACCAACCCCTGTAACTCTGA 1247
Query 1133 ATGTATCTCCGTTGAAGAAGGGCGGATTGGCGAAACCCCCTGTCAGGAGGCCAAAGAAAT 1192
||||||||| || ||||| ||||||||||||||||| | ||||||||| ||||||||||
Sbjct 1248 GTGTATCTCCATTAAAGAAAGGCGGATTGGCGAAACCACATGTCAGGAGACCAAAGAAAT 1307
Query 1193 TCTGGACGCCTGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAGTATGGTAAATCAT 1252
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 TCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAGTAAAAGAGTATGGTAAATCAT 1367
Query 1253 GGAAAGATATAAAGAATGGAAACCCTGCACTATTCGCGGAGAGGACAGAGGTGGATTTGA 1312
|||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct 1368 GGAAAGATATAAAGAATGGAAACCCTACAGTATTTGCGGAGAGGACAGAGGTGGATTTGA 1427
Query 1313 AGGATAAATGGAGGAACTTAGTTGGTGGGTAG 1344
| |||||||||||||||||||| |||||||||
Sbjct 1428 AAGATAAATGGAGGAACTTAGTCGGTGGGTAG 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66164318310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5