BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917558
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58370.2 | Symbols: | P-loop containing nucleoside triphosp... 2139 0.0
> AT5G58370.2 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:23593117-23596026
FORWARD LENGTH=1912
Length=1912
Score = 2139 bits (1158), Expect = 0.0
Identities = 1328/1409 (94%), Gaps = 16/1409 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTTAGATACTTCTTTAGGTCATAAGCTCAAGATAAGGCTGAAGCTTTCATCACTT 60
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct 242 ATGTCTTTAGATACTTCTTTAGGTCTTAAGCTCAAGAAAAGGCTGAAGCTTTCATCGTTT 301
Query 61 AGCTCTAATTCTTCTTCTAAAGGAAGGAGTAGATCCATTACTCAACGCAGTGATGATGAC 120
||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 302 AGCTCCAATTCTTCTTATAAAGGAAAGAGTAGATCCATTACTCAACGCAGTGATGATGAC 361
Query 121 ACTAACTCTCGGAAGACTAGTAAGACTACGGTTTCGTATATGAAGAAGAAGAGGGTCTAC 180
|||||||||| | | |||||||||||||||| ||||||||||||||||||||||
Sbjct 362 ACTAACTCTC----G----G-AAGACTACGGTTTCGTCTATGAAGAAGAAGAGGGTCTAC 412
Query 181 CCTAATAAGGCTGAGC---ATAACCATGTGAACGAAATCCCACGCACCATGTGGGCTGCC 237
|| ||||||||| ||| ||||||||||||| |||||||| ||||| ||||||| |||
Sbjct 413 CCCAATAAGGCTAAGCATAATAACCATGTGAATGAAATCCCTCGCACGATGTGGGTTGCT 472
Query 238 TCAAAGAGAAACCAACGGTCTACTTCTAGTTTTAAGACCTCTACTGATGCTGCAACAAGT 297
||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 473 TCAAAGAGAAACCAAGGGTCTACTTCTAGTTTTAAGACCGCTAATGATGCTGCAACTAGT 532
Query 298 GTGTTTAAAACAAAGTCACCGAG-GGTAGATGATGCTACTCGAAAGAGCTACAGGAAGAG 356
||||||||||||||||||| ||| || | ||||| ||||||||||||||||||||||||
Sbjct 533 GTGTTTAAAACAAAGTCACGGAGTGG-GGTTGATGTTACTCGAAAGAGCTACAGGAAGAG 591
Query 357 AGATGATTTGGATAATAATGCAGATGTGAG-CCGAAGGAAAAGCTCAGATGTGCAGTCTT 415
|||||| ||||||| ||||| ||||||||| || ||| |||| || ||||||| |||||
Sbjct 592 AGATGAATTGGATAGTAATGTAGATGTGAGTCC-CAGGGAAAGTTCTGATGTGCCGTCTT 650
Query 416 TTAAGGCTAGAAAACAAGCGTTTTCAGAGAAGAGAGTTGTGGGAGATGGTTCAGATATTC 475
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 651 TTAAGGCTAGAAAACAGGTGTTTTCAGAGAAGAGAGTTGTGGGAGATGGTTCAGATGTTC 710
Query 476 AGGAGGATAAACCAAGGAAGAGAAAGAGGATACGACTGGATCCCTATGATACCTCAAATA 535
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 711 AGGAGGATAAACCAAGGAAGAGAAAGAGGATACGACTTGATCCTTATGATACCTCAAATA 770
Query 536 AAAGAATAGATGACGATGTCGTTCTTGATGAAGGCCTTAGAGTCAAGAACATAAAAGATG 595
||||||| | ||| |||||| |||||||||| ||||||||||| ||||||||||||||||
Sbjct 771 AAAGAATTGTTGATGATGTCCTTCTTGATGATGGCCTTAGAGTAAAGAACATAAAAGATG 830
Query 596 CAGTGAAAAGCGTAGAAATGTCGAAAAATGCACAGTTTCGTGCAATTCAGCCTAGTCATT 655
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CAGTTAAAAGTGTAGAAATGTCGAAAAATGCACAGTTTCGTGCAATTCAGCCTAGTCATT 890
Query 656 CGATCCTTTCCTATGTGGAAGAAAATCTGTTGGGGCGTAGACGTTTAATTGAGCTAAAGA 715
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 CGATCCTCTCCTATGTGGAAGAAAATCTGTTGGGGCGTAGACGTTTAATTGAGCTAAAGA 950
Query 716 AGGCCGGCTACAACACAGAGCTTCCTGCTCCATTAGATAATATTCCACAGTCAACCAGCA 775
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 951 GGGCCGGCTATAACACAGAGCTTCCTGCTCCATTAGATAATATTCCTCAGTCAACCAGCA 1010
Query 776 CAGAGAGAGAACGTATAGAAGAAAGTGTATTTAGGAATAAATTGGAATTCTTTGCTGCTG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CAGAGAGAGAACGTATAGAAGAAAGTGTATTTAGGAATAAATTGGAATTCTTTGCTGCTG 1070
Query 836 CAAATGTTTCATCTTCATTTCCACCTCCTGATGTACCTGAGATTGCATTTGCAGGAAGGT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CAAATGTTTCATCTTCATTTCCACCTCCTGATGTACCTGAGATTGCATTTGCAGGAAGGT 1130
Query 896 CAAATGTTGGGAAATCGTCTCTGCTAAATGCTCTGACCAGACAGTGGGGTGTTGTAAGAA 955
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1131 CAAATGTTGGCAAATCGTCTCTGCTAAATGCTCTTACCAGACAGTGGGGTGTTGTAAGAA 1190
Query 956 CATCTGACAAACCAGGACTGACCCAGACCATCAATTTCTTCGGTCTTGGTCCGAAGGTTC 1015
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1191 CATCTGACAAACCAGGACTGACCCAGACCATCAATTTCTTTGGTCTTGGTCCGAAGGTTC 1250
Query 1016 GCCTTGTTGATTTGCCAGGCTACGGCTTTGCCTTTGCAAAAGATGAAGTTAAGGAAGCAT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 GCCTTGTTGATTTGCCAGGCTACGGCTTTGCCTTTGCAAAAGATGAAGTTAAGGAAGCAT 1310
Query 1076 GGGAAGATCTTGTAAAGGAATATGTTTCGACAAGAACTAGTCTTAAAAGGGTATGCCTCC 1135
||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 1311 GGGAAGATCTTGTAAAGGAATATGTCTCGACAAGAACCAGTCTTAAACGGGTATGCCTCC 1370
Query 1136 TTGTTGACACCAAATGGGGTATGAAGCCAAGAGACCAGGAACTTATTAATCTAATGGAGA 1195
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1371 TTGTTGACACCAAATGGGGTATGAAGCCAAGAGACCAGGAACTGATTAATCTGATGGAGA 1430
Query 1196 GATCGAATACAAAGTATCAGATAGTCTTAACCAAGACAGATGTGGTTTTTCCAATGGATG 1255
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1431 GATCGAATACAAAGTATCAGATAGTCTTAACCAAGACGGATGTGGTTTTCCCAATTGATG 1490
Query 1256 TGGCACGTCGGGCAATGCAAATCGAAGAGAAGTTGAAGGCAAACAGATCAATTGTCCAGC 1315
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TGGCACGTCGAGCAATGCAAATCGAAGAGAAGTTGAAGGCAAACAGATCAATTGTCCAGC 1550
Query 1316 CTCTGATGATGGTGAGCTCAAGATCAGGAGCAGGCATAGGAAGCTTAAGAACTGCCCTTG 1375
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1551 CTCTGATGATGGTGAGCTCAAGATCAGGAGCAGGTATAGGAAGTTTAAGAACTGCCCTTG 1610
Query 1376 CTAAAATTGCAAAGTTTGCAAAGTTCTAG 1404
|||||||||| | |||||||||||| |||
Sbjct 1611 CTAAAATTGCTAGGTTTGCAAAGTTTTAG 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5