BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917562

Length=195
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like su...  87.9    3e-17


> AT3G46210.1 | Symbols:  | Ribosomal protein S5 domain 2-like 
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062

 Score = 87.9 bits (47),  Expect = 3e-17
 Identities = 47/47 (100%), Gaps = 0/47 (0%)
 Strand=Plus/Minus

Query  1    ATGAGGACGATGAAGGATATTACGGGAACAAGCAAGAGGTCTCAGCT  47
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  206  ATGAGGACGATGAAGGATATTACGGGAACAAGCAAGAGGTCTCAGCT  160



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8651832372


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5