BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917563

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58390.1 | Symbols:  | Peroxidase superfamily protein | chr5...   283    7e-76


> AT5G58390.1 | Symbols:  | Peroxidase superfamily protein | chr5:23599567-23601325 
REVERSE LENGTH=1220
Length=1220

 Score =  283 bits (153),  Expect = 7e-76
 Identities = 177/189 (94%), Gaps = 0/189 (0%)
 Strand=Plus/Plus

Query  154  TGTGACGGATCCATACTATTGGACGACACACCGTCATTTTTGGGAGAGAAAACCGCGGGA  213
            |||||||||||| |||| ||||| ||||||||||| |||||||||||||||||| | |||
Sbjct  283  TGTGACGGATCCTTACTGTTGGATGACACACCGTCTTTTTTGGGAGAGAAAACCTCAGGA  342

Query  214  CCCAGCAATAAGACTGTGAGGGGGTTCGAAGTGATCGACAAAATCAAGTTTAAGATTGAG  273
            |||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  343  CCCAGCAATAACTCTGTGAGGGGGTTCGAAGTGATCGACAAAATCAAGTTTAAGGTTGAG  402

Query  274  AAAATGTGCCCGGGCATCGTCTCATGCGCAGACATTCTCGCCATCACTGCTCGCGACTCT  333
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| 
Sbjct  403  AAAATGTGCCCGGGCATCGTCTCATGCGCAGACATTCTAGCCATCACTGCTCGGGACTCC  462

Query  334  GTTCTCCTC  342
            |||||||||
Sbjct  463  GTTCTCCTC  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17040766911


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5