BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917565
Length=603
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35796.1 | Symbols: | pseudogene, similar to Putative prote... 300 1e-80
AT1G65250.1 | Symbols: | Protein kinase superfamily protein | ... 287 9e-77
AT1G65190.1 | Symbols: | Protein kinase superfamily protein | ... 276 2e-73
AT1G67470.1 | Symbols: | Protein kinase superfamily protein | ... 161 6e-39
> AT5G35796.1 | Symbols: | pseudogene, similar to Putative protein
kinase, blastp match of 29% identity and 1.6e-16 P-value
to GP|21671940|gb|AAM74302.1|AC083944_20|AC083944 Putative
protein kinase {Oryza sativa (japonica cultivar-group)} | chr5:13968537-13969932
REVERSE LENGTH=1396
Length=1396
Score = 300 bits (162), Expect = 1e-80
Identities = 203/223 (91%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 345 GTCAAAATTAAAGGAAGACCGA-CGAATCGAAGAGATTGCAGATCCAGAGATGATAGAAA 403
||||| |||||||||||||||| | ||| |||||||||||||||||| ||||||||||||
Sbjct 862 GTCAACATTAAAGGAAGACCGATC-AATGGAAGAGATTGCAGATCCAAAGATGATAGAAA 920
Query 404 AGATGGGTCAAATTTCAGAACAAGAGCTTTGTCAAATGGAAGCTTTCCGAATGCTCTCAC 463
|||||||||||||||| ||| ||||||||||||||||| |||||||||||||| | ||||
Sbjct 921 AGATGGGTCAAATTTCCGAAGAAGAGCTTTGTCAAATGAAAGCTTTCCGAATGTTGTCAC 980
Query 464 TGAGATGCATCGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTGGCCAAAGAACTTA 523
|||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 981 TGAGATGCATGGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTTGTCAAAGAACTAA 1040
Query 524 AGAAGATCCAAACATCTCTTCAAAACGACTCTTCTTCTCCTTC 566
|||| ||||||| ||||||| |||||||||||||||| |||
Sbjct 1041 AGAAAATCCAAAGATCTCTTTTTAACGACTCTTCTTCTCTTTC 1083
Score = 200 bits (108), Expect = 1e-50
Identities = 178/209 (85%), Gaps = 15/209 (7%)
Strand=Plus/Plus
Query 44 AGAGAGGAGCCAAGTTGTTAGAAGATCTGATCGAATTAGGCCATGGCAAATCCAATCCCA 103
||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 82 AGAGAGGGGCCAAGTTGTTAGAAGAGCTCATCGAATTCGGCCATGGCAAATCCAATCCCA 141
Query 104 TCAAATTCTTGTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGACT---CTA 160
|||||||||| |||| ||||||||||| ||| |||||||||||||||||||||| ||
Sbjct 142 TCAAATTCTTCTCTGGTGATGAGATCCGCAATGCCACCAACAATTTCAGCGACTAATCTT 201
Query 161 AT--C--GT---G--TTTC-CT-CCGATTGGTATTCAGGTAAGAACGAGAACCATCCCAT 209
| | | | ||| || || | ||||||||||||||||||||||||||||||||
Sbjct 202 GTTTCTCGAAAAGAATTTTACTACC-ACTGGTATTCAGGTAAGAACGAGAACCATCCCAT 260
Query 210 GATACTCATCAAGAAAGATGTTGGCTTGT 238
||| ||||| ||||||||| |||||||||
Sbjct 261 GATTCTCATTAAGAAAGATCTTGGCTTGT 289
> AT1G65250.1 | Symbols: | Protein kinase superfamily protein
| chr1:24234338-24235808 FORWARD LENGTH=1471
Length=1471
Score = 287 bits (155), Expect = 9e-77
Identities = 200/222 (90%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 346 TCAAAATTAAAGGAAGACCGACGAATCGAAGAGATTGCAGATCCAGAGATGATAGAAAAG 405
|||| ||||||||||||| ||| ||| ||||||||||||||| || ||||||||||||||
Sbjct 929 TCAACATTAAAGGAAGACAGACCAATGGAAGAGATTGCAGATTCAAAGATGATAGAAAAG 988
Query 406 ATGGGTCAAATTTCAGAACAAGAGCTTTGTCAAATGGAAGCTTTC-CGAATGCTCTCACT 464
||||||||||||||||||||||||| |||||||||| |||||||| ||| ||| |||||
Sbjct 989 ATGGGTCAAATTTCAGAACAAGAGCGTTGTCAAATGAAAGCTTTCTTGAA-GCTATCACT 1047
Query 465 GAGATGCATCGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTGGCCAAAGAACTTAA 524
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1048 GAGATGCACCGGCCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTGGCCAAAGAACTAAA 1107
Query 525 GAAGATCCAAACATCTCTTCAAAACGACTCTTCTTCTCCTTC 566
||||| |||| ||||||| |||||||||||||||| |||
Sbjct 1108 CAAGATTCAAAGATCTCTTTTTAACGACTCTTCTTCTCTTTC 1149
Score = 200 bits (108), Expect = 1e-50
Identities = 190/226 (84%), Gaps = 20/226 (9%)
Strand=Plus/Plus
Query 43 GAGAGAGGAGCCAAGTTGTTAGAAGATCTGATCGAAT-TAGGCCATGGCAAATCCAATCC 101
|||||||| ||||||||||||||||| || ||||||| | || ||||||||||||||||
Sbjct 143 GAGAGAGGGGCCAAGTTGTTAGAAGAGCTCATCGAATGT-TGCGATGGCAAATCCAATCC 201
Query 102 CATCAAATTCTTGTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGACTCTAA 161
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 202 CATCAAATTCTTCTCTGCTGATGAGATCCTCAAAGCCACCAACGATTTCAGCGACTCTAA 261
Query 162 TC--GT-----G-TT-----T-CC-TCCGATTGGTATTCAGGTAAGAACGAGAACCATCC 206
| || | || | || | | | |||||||| |||||||||||||| |||||
Sbjct 262 TTTTGTTTTACGATTAGAAGTTCCCTTCAAATGGTATTCTGGTAAGAACGAGAATCATCC 321
Query 207 CATGATACTCATCAAGAAAGATGTTGGCTTGT--A-TAGCTTGAGA 249
||||||||| ||||||||||||||||||| || | | ||||||||
Sbjct 322 CATGATACTAATCAAGAAAGATGTTGGCTGGTGGAGTGGCTTGAGA 367
> AT1G65190.1 | Symbols: | Protein kinase superfamily protein
| chr1:24215644-24217328 REVERSE LENGTH=1685
Length=1685
Score = 276 bits (149), Expect = 2e-73
Identities = 194/215 (90%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 345 GTCAAAATTAAAGGAAGACCGACGAATCGAAGAGATTGCAGATCCAGAGATGATAGAAAA 404
||||||||||||| ||||||||| ||| |||||||||||||||| | |||||||| ||||
Sbjct 959 GTCAAAATTAAAGAAAGACCGACCAATGGAAGAGATTGCAGATCGAAAGATGATAAAAAA 1018
Query 405 GATGGGTCAAAT-TTCAGAACAAGAGCT-TTGTCAAATGGAAGCTTTCCGAATGCTCTCA 462
||||||||||| || |||||||||||| || ||||||| |||||||||| |||||||||
Sbjct 1019 TATGGGTCAAATCTT-AGAACAAGAGCTCTT-TCAAATGAAAGCTTTCCGGATGCTCTCA 1076
Query 463 CTGAGATGCATCGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAAGTGGCCAAAGAACTT 522
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1077 CTGAGATGCATGGGTCCTAGTGAAGAAGTTCCAACGATGGTGGAGGTGGCCAAAGAACTA 1136
Query 523 AAGAAGATCCAAACATCTCTTCA-AAACGACTCTT 556
||||||||||||| ||||||| | ||| || ||||
Sbjct 1137 AAGAAGATCCAAAAATCTCTTAATAAA-GATTCTT 1170
Score = 224 bits (121), Expect = 7e-58
Identities = 213/252 (85%), Gaps = 27/252 (11%)
Strand=Plus/Plus
Query 1 ATGGGTTGGTGGTGGAGGAAG-AG-----GAATAAGAAGCTA-ATATTGGAGAGAGGAGC 53
|||||||||| |||||||||| || ||||||||||||| | |||||||||||||||
Sbjct 111 ATGGGTTGGTTGTGGAGGAAGAAGAAAAAGAATAAGAAGCTAGA-ATTGGAGAGAGGAGC 169
Query 54 CAAGTTGTTAGAAGATCTGATCGAAT-TAGGCCATGGCAAATCCAATCCCATCAAATTCT 112
||||||||||||||| || ||||||| | | | |||||||||||||||||||||||||||
Sbjct 170 CAAGTTGTTAGAAGAGCTCATCGAATGTTG-CGATGGCAAATCCAATCCCATCAAATTCT 228
Query 113 TGTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGACTCTAATCGTGTT--TC 170
| |||||||||||||||| |||||||||||||| ||||||| ||||||||| |||| ||
Sbjct 229 TCTCTGCTGATGAGATCCGCAAAGCCACCAACATTTTCAGCCACTCTAATCTTGTTCATC 288
Query 171 -------------CT-CCGATTGGTATTCAGGTAAGAACGAGAACCATCCCATGATACTC 216
|| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 289 AGGAAGAATTTTACTGCCAAT-GGTATTCAGGTAAGAACGAGAACCATCCCATGATACTC 347
Query 217 ATCAAGAAAGAT 228
|||| |||||||
Sbjct 348 ATCAGGAAAGAT 359
> AT1G67470.1 | Symbols: | Protein kinase superfamily protein
| chr1:25272182-25273576 FORWARD LENGTH=1395
Length=1395
Score = 161 bits (87), Expect = 6e-39
Identities = 113/126 (90%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 46 AGAGGAGCCAAGTTGTTAGAAGATCTGATCGAATTAGGCCATGGCAAATCCAATCCCATC 105
|||||||| ||| ||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 117 AGAGGAGCGAAGCTGTTAAAAGATCTGATCGAATGCTGCGATGGCAAATCCAATCCCATC 176
Query 106 AAATTCTTGTCTGCTGATGAGATCCTCAAAGCCACCAACAATTTCAGCGACTCTAATCGT 165
|||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||| |
Sbjct 177 AAATTCTTTTCTGCTGATGAGATCCGCAAAGCCACCAACAATTTCGGCGTGTCTAATCTT 236
Query 166 GTTTCC 171
||||||
Sbjct 237 GTTTCC 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29035336966
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5