BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg917590 Length=942 Score E Sequences producing significant alignments: (Bits) Value AT4G04390.1 | Symbols: | transposable element gene | chr4:2142... 150 2e-35 > AT4G04390.1 | Symbols: | transposable element gene | chr4:2142825-2147224 FORWARD LENGTH=2892 Length=2892 Score = 150 bits (81), Expect = 2e-35 Identities = 221/288 (77%), Gaps = 12/288 (4%) Strand=Plus/Plus Query 1 ATGAACGAGTTATCTCGGATGTTAGATGCTAAATTGAATGCGCAGTACAAAAAGATCATT 60 ||||||| |||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 1192 ATGAACGCGTTATCTCGGATGTTAGATGCTAAATTGGCCACGCAGTACAAAAAGATAATG 1251 Query 61 AAAGGTGTTTCTGATTGGTTTATTGCAAACACTTTGATTTCTGCGGAGAATGGGGAAGAT 120 ||||||||| ||||||||||||| |||||||||| || || | | |||||| ||||| Sbjct 1252 AAAGGTGTTACTGATTGGTTTATCGCAAACACTTCCATATCAACTAATAATGGGAAAGAT 1311 Query 121 GTTCCTCCGGAAAATGGTAAAGAAGTTTCTGC-GGAGAA-GAGGAAAGGGAAAAAGGTTC 178 | ||| | || ||||| ||||| | |||| || || | |||||| ||| | |||| Sbjct 1312 ATCCCTTCTGAGAATGGGGTAGAAGCTCCTGCTGGC-AATG-GGAAAGATAAAGATGTTC 1369 Query 179 CTGTTCCCCAGTC-TAAACC-TCTCCACATTTCCGATGGAGATGATGATTTTGACACTCT 236 || | ||| || ||| || | ||| || || |||||||| ||||||||||| | | | Sbjct 1370 CTCTGACCC-GTAATAATCCGTTTCC-CAACTCAGATGGAGACGATGATTTTGAAATTGT 1427 Query 237 CTTTCCCCTC--CGTCCGCCGAGTCGTCGTCCTTCTCGCATTGGCAAA 282 | |||||| ||| ||| || |||||| || | ||| |||||||| Sbjct 1428 CC--CCCCTCTTCGTTCGCAGACCCGTCGTTCTACACGCCTTGGCAAA 1473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46064712799 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5