BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917590

Length=942
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04390.1 | Symbols:  | transposable element gene | chr4:2142...   150    2e-35


> AT4G04390.1 | Symbols:  | transposable element gene | chr4:2142825-2147224 
FORWARD LENGTH=2892
Length=2892

 Score =  150 bits (81),  Expect = 2e-35
 Identities = 221/288 (77%), Gaps = 12/288 (4%)
 Strand=Plus/Plus

Query  1     ATGAACGAGTTATCTCGGATGTTAGATGCTAAATTGAATGCGCAGTACAAAAAGATCATT  60
             ||||||| ||||||||||||||||||||||||||||    |||||||||||||||| || 
Sbjct  1192  ATGAACGCGTTATCTCGGATGTTAGATGCTAAATTGGCCACGCAGTACAAAAAGATAATG  1251

Query  61    AAAGGTGTTTCTGATTGGTTTATTGCAAACACTTTGATTTCTGCGGAGAATGGGGAAGAT  120
             ||||||||| ||||||||||||| ||||||||||  || ||  |  | |||||| |||||
Sbjct  1252  AAAGGTGTTACTGATTGGTTTATCGCAAACACTTCCATATCAACTAATAATGGGAAAGAT  1311

Query  121   GTTCCTCCGGAAAATGGTAAAGAAGTTTCTGC-GGAGAA-GAGGAAAGGGAAAAAGGTTC  178
              | ||| | || |||||   ||||| | |||| ||  || | ||||||  ||| | ||||
Sbjct  1312  ATCCCTTCTGAGAATGGGGTAGAAGCTCCTGCTGGC-AATG-GGAAAGATAAAGATGTTC  1369

Query  179   CTGTTCCCCAGTC-TAAACC-TCTCCACATTTCCGATGGAGATGATGATTTTGACACTCT  236
             || |  ||| ||  ||| || | ||| ||  || |||||||| ||||||||||| | | |
Sbjct  1370  CTCTGACCC-GTAATAATCCGTTTCC-CAACTCAGATGGAGACGATGATTTTGAAATTGT  1427

Query  237   CTTTCCCCTC--CGTCCGCCGAGTCGTCGTCCTTCTCGCATTGGCAAA  282
             |   ||||||  ||| ||| ||  |||||| || | ||| ||||||||
Sbjct  1428  CC--CCCCTCTTCGTTCGCAGACCCGTCGTTCTACACGCCTTGGCAAA  1473



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46064712799


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5