BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917601
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58690.1 | Symbols: ATPLC5, PLC5 | phosphatidylinositol-spec... 1703 0.0
> AT5G58690.1 | Symbols: ATPLC5, PLC5 | phosphatidylinositol-speciwc
phospholipase C5 | chr5:23709529-23712131 REVERSE LENGTH=1985
Length=1985
Score = 1703 bits (922), Expect = 0.0
Identities = 1055/1117 (94%), Gaps = 17/1117 (2%)
Strand=Plus/Plus
Query 535 CCAGATCTTCAAGCCAAAGCAGCTGAGATGATGAAAGAGATATTCATGGATATGGTGTAT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CCAGATCTTCAAGCCAAAGCAGCTGAGATGATGAAAGAGATATTCATGGATATGGTGTAT 794
Query 595 TTTCCCGAGGCTGGCGGTTTAAAAGAGTTCCCTTCACCAGAAGATCTCAAGTACAAAATT 654
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 795 TTTCCAGAGGCTGGTGGTTTAAAAGAGTTTCCTTCACCAGAAGATCTCAAGTACAAAATT 854
Query 655 GTAATATCTACAAAGCCTCCCAAAGGTAATTTAA-AAAGGGACAAGGATTCTGAGTCAGA 713
|||||||||||||||||||| ||||||| |||| ||| |||||||||||||||||||||
Sbjct 855 GTAATATCTACAAAGCCTCCTAAAGGTAGCTTAAGAAA-GGACAAGGATTCTGAGTCAGA 913
Query 714 TGTATCAGGAAAGGCGTCATCAGACT-TTTCAGATGACCAAGTAGACGATGGGAAGACTG 772
|| ||||||||||||||||||||| | |||| | | | |||||||| ||||||||
Sbjct 914 TGCATCAGGAAAGGCGTCATCAGA-TGTTTC--A-G--C----AGACGATGAGAAGACTG 963
Query 773 AGGAAGAAACCAGCGAGGCCAAAAATGAAAAGGAAGGATTAGATCAAGAATCCAGCAACT 832
|||||||||| || ||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 964 AGGAAGAAACAAGTGAGGCCAAAAATGAAGAGGATGGATTTGATCAAGAATCCAGCAACT 1023
Query 833 TGGATTTCCTCACCTATAGCCGCCTGATAACGATTCCTTCTGGAAATGCTAAAAATGGAT 892
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1024 TGGATTTCCTCACCTATAGTCGCCTAATAACGATTCCTTCTGGAAATGCTAAAAATGGAT 1083
Query 893 TAAAGGAGGCACTTACGATCGATAATGGTGGAATTAGACGGCTGAGTTTGAGGGAGCAGA 952
||||||| ||||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1084 TAAAGGAAGCACTAACAATCGATAATGGTGGAGTTAGACGGCTGAGTTTGAGGGAGCAGA 1143
Query 953 AGTTCAAGAAAGCCACTGAAATGTATGGAACCGAAGTCATGAAATTCACACAGAAGAATC 1012
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1144 AGTTCAAGAAAGCCACTGAAATGTATGGAACCGAAGTCATAAAATTCACACAGAAGAATC 1203
Query 1013 TGTTGAGGATATATCCCAAGGCCACACGAGTAAATTCCTCCAACTATAGGCCCTACAACG 1072
||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 1204 TGTTGAGAATATATCCCAAGGCTACCCGAGTAAATTCCTCCAACTATAGGCCATACAACG 1263
Query 1073 GTTGGATGTACGGAGCTCAAATGGTTGCTTTCAACATGCAGGGCTATGGAAGAGCACTCT 1132
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 1264 GTTGGATGTACGGAGCTCAAATGGTCGCTTTCAACATGCAGGGCTATGGAAGAGCTCTTT 1323
Query 1133 GGATGATGCATGGTATGTTTAGAGGG-AATGGTGGATGCGGGTACGTGAAAAAACCAGAC 1191
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 1324 GGATGATGCATGGTATGTTTAG-GGGAAATGGTGGATGCGGGTACGTGAAAAAACCGGAC 1382
Query 1192 TTTATAATGAAAAATGGTCTCGGTGGAGAAGTGTTTGACCCAAAAGCGAAATTACCCATA 1251
||||| ||||| ||| |||| ||||||||||||| |||| |||||||| |||||||||
Sbjct 1383 TTTATGATGAACAATAATCTCAGTGGAGAAGTGTTCAACCCGAAAGCGAAGTTACCCATA 1442
Query 1252 AAGAAAACTCTAAAAGTGAAAGTATACATGGGCAAAGGATGGGACTCTGGTTTCCAGCGA 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 AAGAAAACTCTAAAAGTGAAAGTATACATGGGCAAAGGATGGGACTCTGGTTTCCAGCGA 1502
Query 1312 ACATGTTTCAACACTTGGTCTTCTCCTAACTTCTACACAAGGGTGGGGATAACAGGAGTA 1371
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1503 ACATGTTTCAACACTTGGTCCTCTCCTAACTTCTACACAAGGGTGGGGATAACAGGAGTA 1562
Query 1372 AGAGCTGATAAGGTAATGAAGAAAACAAAGAAAGAAGAAAAGACATGGGAGCCATTCTGG 1431
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1563 AGAGGTGATAAGGTAATGAAGAAAACAAAGAAAGAACAAAAGACATGGGAGCCATTCTGG 1622
Query 1432 GACGAGGAGTTTGAGTTTCAGCTAACAGTACCGGAGCTGGC-TCTGCTCAGAATAGAAGT 1490
|||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct 1623 AACGAGGAGTTTGAGTTTCAGCTAACAGTACCGGAGCTGGCGT-TGCTAAGAATAGAAGT 1681
Query 1491 TCACGACTACAACATGCCGGAGAAGGACGATTTCTCGGGTCAGACATGTTTGCCTGTGTC 1550
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TCACGACTACAACATGCCAGAGAAGGACGATTTCTCGGGTCAGACATGTTTGCCTGTGTC 1741
Query 1551 AGAGCTGAGACAAGGCATACGTTCTGTTCCTTTGTATGATCGCAAAGGCGAGAGACTAGT 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 AGAGCTGAGACAAGGCATACGTTCTGTTCCTTTGTATGATCGCAAAGGCGAGAGACTAGT 1801
Query 1611 TTCAGCTACACTTCTCATGCGGTTTCACTTTGTTTAA 1647
||||| ||||||||||||||||||||||||| |||||
Sbjct 1802 TTCAGTTACACTTCTCATGCGGTTTCACTTTCTTTAA 1838
Score = 817 bits (442), Expect = 0.0
Identities = 482/502 (96%), Gaps = 0/502 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGAGAGATGGGGAGCTACAAAATGGGTTTGTGTTTCAGTGACAAGCTCGGGATG 60
||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||
Sbjct 102 ATGAAGAGAGATATGGGGAGTTACAAAATGGGTTTGTGTTGCAGTGACAAGCTCAGGATG 161
Query 61 AACAGAGGAGCTCCACCTCCGGATGTAGTGACTGCGTTTGTAGAGTATACCGAGGGCAGG 120
||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct 162 AACAGAGGAGCTCCACCTCAGGATGTGGTGACGGCGTTTGTAGAGTATACCGAGGGCAGG 221
Query 121 AACCACATGACGGCAGAGCAGCTATGTCGGTTCTTGGTTGAGGCGCAGGACGAGACTGAG 180
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 222 AGCCACATGACGGCAGAGCAGCTATGTCGGTTCTTGGTTGAGGTGCAGGACGAGACTGAA 281
Query 181 GTGTTGGTTTCAGATGCAGAGAAGATCATTGAAAGAATCACATGTGAAAGACATCATATC 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 282 GTGTTGGTTTCAGATGCAGAGAAGATCATAGAAAGAATCACATGTGAAAGACATCATATC 341
Query 241 ACTAAGTTCTTGAGGCATACGCTGAACCTTGATGATTTCTTCAGTTTCTTGTTCTCAGAT 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 342 ACTAAGTTCTTGAGGCATACGCTGAACCTCGATGATTTCTTCAGTTTCTTGTTCTCAGAT 401
Query 301 GATCTGAATCATCCAATTGATAGTAAGGTGCATCAAGACATGGCCTCTCCCTTGTCCCAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 402 GATCTGAATCATCCAATTGATAGTAAGGTGCATCAAGACATGGCCTCTCCCTTGTCGCAC 461
Query 361 TATTTCATTTACACGAGCCATAATTCGTATCTGACTGGAAATCAGATCAACAGTGAATGC 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 462 TATTTCATTTACACCAGCCATAATTCGTATCTGACTGGAAATCAGATCAACAGCGAATGC 521
Query 421 AGCGATGTACCTCTTATAAAGGCATTAAAGAGACGTGTTCGAGCTCTTGAACTTGACCTG 480
||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 522 AGCGACGTACCTCTCATAAAGGCATTAAAGAGAGGTGTTCGAGCTCTTGAACTTGACATG 581
Query 481 TGGCCTAAATCTACTAAGGACG 502
|||||||| |||||||||||||
Sbjct 582 TGGCCTAACTCTACTAAGGACG 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81375083445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5