BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917622
Length=3228
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58880.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3843 0.0
> AT5G58880.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G29620.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:23775966-23779504 FORWARD LENGTH=3267
Length=3267
Score = 3843 bits (2081), Expect = 0.0
Identities = 2553/2775 (92%), Gaps = 55/2775 (2%)
Strand=Plus/Plus
Query 1 ATGGGCGTTGACGCGAAAGAGATCATCGTAATATTATGGAAAATTCTTGGATATTCGATG 60
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGCATTGACACGAAAGAGATCATCGTTATATTATGGAAAATTCTTGGATATTCGATG 60
Query 61 AACATGAGCATCAAATTCATGAGAAACCACCCAATATTGTCAGGGGTTTCAATGTTTTTA 120
|||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 61 AACATGAGCATCAAATTCATGATAAACCACCCGGTTTTGTCAGGGGTTTCAATGTTTTTA 120
Query 121 CTTGTGCTATACATTTTCCTCCCTACTCTCTTGTTCTTCTTGATTTACT-CGTCACCGGT 179
|| ||||||||||||||||||||| |||| || ||||||||||| || | | ||||||||
Sbjct 121 CTCGTGCTATACATTTTCCTCCCTTCTCTGTTCTTCTTCTTGATCTA-TACATCACCGGT 179
Query 180 TCTTGCATGTGCTCTAGTGTATGCACGAGAAAAGCTAGGATTAAGATTCTCAAGTTCGTA 239
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 180 TCTTGCATGTGCTCTAGTGTATGCCCGAGAAAAGCTAGGGTTAAGATTCTCAAGTTCGTA 239
Query 240 TTCAGAGCCAAAGAAGAGTTGTGGTGGAGAAAAGAGATGTCATTTAAAACAACAACGAAG 299
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 240 TTCAGAGCCAAAGAAGAGTTGTGGAGGAGAAAAGAGATGCCATTTAAAACAACAACGAAG 299
Query 300 TGTCCGACGAAATGCTCGAATGAAAGTTGAAGAATGGGATTCACAAACAAGCGAGGAAGA 359
||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 300 TGTTAGACGAAATGCTCGAATGAAAGTTGAAGAATGGGATTCACAGACAAGCGAAGAAGA 359
Query 360 GAAAGACAAAGTTATCTTGACTTCTCTTTACAATGACCTCCTTGGTCGTACTCCTCATTT 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 360 GAAAGACAAAGTTATCTTGACTTCTCTTTACAATGATCTCCTTGGTCGTACTCCTCAATT 419
Query 420 CGAGGAGTCTCCAAAAGCTTTAGAAACCAATGTAGTAGA-G--GAAGAAGACAATGAGAA 476
||| ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||
Sbjct 420 CGAAGAGTCTCCAAAAGCTTTAGAAACCAATGTAGTAGAGGAAGAAGAAGACAAAGAGAA 479
Query 477 GGAGTTTCTTGGAGAGGAAGATTCTCGTGATTTAGGTCAACTTAACGTTGAAGAACCAAT 536
||||||||||||||||| || |||||||||||| ||||| || |||||||||||||||||
Sbjct 480 GGAGTTTCTTGGAGAGGGAGTTTCTCGTGATTTGGGTCATCTCAACGTTGAAGAACCAAT 539
Query 537 GGTTTGCAACTGTGAGATCAAATATGGAGAATCAGATGGTAAAGAAGAGATGAAAGAGGA 596
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 540 GGTTTGCAACTGTGAGATCAAATATGGAGAATCAGATGGTAAAGTAGAGATGAAACAGGA 599
Query 597 GATGAGTAATGTTAATGAGCAGGGGATTTCagagattgagagaaataagagactagagag 656
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 GATGAGTAATGCTAATGAGCATGGGATTTCAGAGATTGAGAGAAATAAGAGACTAGAG-T 658
Query 657 c-ttaatagctagaagaagagcgaggagaCTCTTTAGACTAGCTTTAGATCAAAGGAATA 715
| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 659 CTTTAATCGCTAGAAGAAGAGCGAGGAGACGCTTTAGACTAGCTTTAGATCAAAAGAATA 718
Query 716 AGCTTCAAGCTGAAGAAACAACTAGCCCTAGACAGAACAACACCAACAGCCTTCACGTTA 775
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 719 AGCTTCAAGCTGAAGAAACAACTAGCCCTAGACAGAACAACACCAACAACCTTCACGTTA 778
Query 776 CGGTTTCGAGGAACTCACTTGAAAAACGTCGAAATAATTCATCAGATGGTACTACTGTTA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CGGTTTCGAGGAACTCACTTGAAAAACGTCGAAATAATTCATCAGATGGTACTACTGTTA 838
Query 836 AAGGATTACCGATTCCAGGCTCAGCTCCTTCTGTGTTGTTACAAGGAAGAAACCCTTTTG 895
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 AAGGATTACAGATTCCAGGCTCAGCTCCTTCTGTGATGTTACAAGGAAGAAACCCTTTTG 898
Query 896 ACATACCTTATGATCCTCAAGAAGAAAGACCTAATCTTACTGGAGATAGCTTTGATCAAG 955
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACATTCCTTATGATCCTCAAGAAGAAAGACCTAATCTTACTGGAGATAGCTTTGATCAAG 958
Query 956 AATTTTCATTGTTTAATCAGAAAGATATGTTCTTTTGTCGTCATGAGAGCTTCTGTCGTT 1015
| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 959 AGTTTTCATTGTTTAATCAAAAAGATTTGTTCTTTTGTCGTCATGAGAGCTTCTGTCGTT 1018
Query 1016 TTGCTCTGTTTTCACCAGAACATGCTCAATGTATGAACAGCCCAGTTTCTGCTTCAGACA 1075
|| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1019 TTTCTCTGTTCTCACCAGAACATGTTCAGTGTATGAACAGCCCAGTTTCTGCTTCAGACA 1078
Query 1076 TTTCAACTACTAGGAAACGTTTAGATTTGGACAATGAATATATGGATCATACTGAACAAA 1135
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1079 TTTCAACTACTAGGAAACGTTTAGATTTGGAGAATGAATATATTGATCATACTGAACAAA 1138
Query 1136 ATCTCCCATGT-AATGGAAAGGGAGCTACAATAGAAGACGACGATAAAAGCGTTGTGAGT 1194
||||||||| | |||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 1139 ATCTCCCAT-TAAATGGAAAAGAAGCTACAATAGAAGACGATGATAAAAGCGTTGTGAGT 1197
Query 1195 GGAAAAAGCGAAGAAAGGGAGGTAGAAATGAATGATAATGAGACAGATTCAAACAAAGAA 1254
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1198 CGAAAAAGCGAAGAAAAAGAGGTAGAAATGAATG---ATGAGACAGATTCAAACAAAGAA 1254
Query 1255 GAATGTGATGATTCAAGTTGTTCAGAAGAAAGTGAGTCAGAACTCA-GCCGTTTAAACAA 1313
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1255 GAATGTGATGATTCAAGTTGTTCAGAAGAAAGTGAGTCAGAACT-ATGCCGTTTAAACAA 1313
Query 1314 AGCCGAGCTCAGGGAAGCTATATGCCAATCGATGGATAACAATCCCGGTTATCTTGTGAA 1373
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1314 AGCGGAGCTCAGGGAAGCTATATGCCAATCCATGGACAACAATCCCGGTTATCTTGTGAA 1373
Query 1374 CCAAACAAGAAATAGTATTCCAACCACATTGCCTAGAGGTTTAGTAGCGCCAAGACTAGA 1433
||| |||||||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 1374 TCAAGCAAGAAATAGTATTCCAAGCACATTACCTAGAGGTATAGTAGCGCCAAGACTAGA 1433
Query 1434 TGATAACAACATGTTTTATGCTCGAAAATGCGGAAATTCGCACAGTCGAACATTTTCAGT 1493
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1434 TGATAACAACATGTTTTACGCTCGCAAATGTGGAAATTCGCACAGTCGAACATTTTCAGT 1493
Query 1494 TGCCTCGGATATGCAAGTTGAGGTTTCAGAGATTGGTTCACCTCCTACAACAGTTGATTG 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TGCCTCGGATATGCAAGTTGAGGTTTCAGAGATTGGTTCACCTCCTACAACAGTTGATTG 1553
Query 1554 GCTTGATGACTGGTCTAATGGCGGTGAATCTTACATTTATGATACAGATATTGACAGAGA 1613
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GCTTGATGACTGGTCTACTGGTGGTGAATCTTACATTTATGATACAGATATTGACAGAGA 1613
Query 1614 AATCGTCCGCGATGAAGAATCACGTAAGAGGATCTCTCACCAATATGAATCAAGAAGTGG 1673
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1614 AATCGTCCGCGATGAAGAATCACGTAAGAGGATGTCTCATCAATATGAATCAAGAAGTGG 1673
Query 1674 AATAGGATCAAAAGAGGAGAATAATGAGACATGGACTAAACCTGAGGCCAAACCAAATCA 1733
||||||||||||||||||||||| |||| || | ||||||||||||||||||||| ||||
Sbjct 1674 AATAGGATCAAAAGAGGAGAATAGTGAGCCAAGTACTAAACCTGAGGCCAAACCAGATCA 1733
Query 1734 GAATTGTGTGGTAGATGAAAACCTTATAACAGTTGATGATGATTTGTCATTGTTAGAAAG 1793
| ||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||
Sbjct 1734 GGATTGTGTGGTAGATGAAGACCTTATAACAGTTGATGAT-AT--GTCATTGTTAGATAG 1790
Query 1794 AAGAAGCCAAACCGAAGAGATTTTTGAGCAGACACCTTCTAGTTCCAATGATGTGTCCAA 1853
||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1791 AAGAACCCAAAGTGAAGAGATTTTTGAGCAGACACCTTCTAGTTCCAGTGATGTGTCCAA 1850
Query 1854 GCCTACAAGCTCTGGGAAATTTGAAGGTATGTTGTTCCATACAAGTGCGTCATTGTCGTC 1913
||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1851 GCCTACAAGTTCTGGGAGATTTGAAGGTATGTTGTTCCATACAAGTGCCTCATTGTCGTC 1910
Query 1914 TATAACAGAAGAGCCTGAAACAATCTTGGACTCGATCGATGGGGGCAACTCGGAGAATCT 1973
|||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||| | |
Sbjct 1911 TATAACAGAAGAACCTGAAACAATCTTGGATTCGATCGATGGCGTCAACTCGGAGATTAT 1970
Query 1974 GAATAATTTGACTGAAGAACTTA-CTGACCCGAGACCTCTGACTACTCTGGATTCATCCA 2032
||||| |||||||| |||| ||| |||||| |||||||||||||| ||| |||| |||||
Sbjct 1971 GAATAGTTTGACTGGAGAA-TTAACTGACCAGAGACCTCTGACTAGTCTTGATTTATCCA 2029
Query 2033 TGAAGAAATTGATTGATGAAGAAGTGGCTGATGTGAAACAAGTAGAAAATGATGATCTTT 2092
|| |||| ||||| ||||||||||| |||||| || ||||| ||||||||||||||||||
Sbjct 2030 TGGAGAATTTGATAGATGAAGAAGTTGCTGATATGCAACAAATAGAAAATGATGATCTTT 2089
Query 2093 GTGGATCTCCTAAGATTATTGATTTAGATATCATTGATCATCAGCAGAAAGACCAAATG- 2151
||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |
Sbjct 2090 GTGGATCTCCTAAGATTATTGATTTTGATATCATTGATCATCAGCAGACAGATCAAACGT 2149
Query 2152 CTGAGTAGCATTCAAGGAGAACATGGGGAAACTAAGAGCTTTTTGGATGCTTCTTTGGAC 2211
| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2150 CGGA-TAGCATTCAAGGAGAACATGAGGAAACTAAGAGCTTCTTGGATGCTTCTTTGGAC 2208
Query 2212 ACATCCTATATAGAATCATTTGAGAGAGAGTTAGAAGGAGAAGAAGAATCAAACTTAGAC 2271
||| ||| |||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 2209 ACACCCTTTATAGAATCATTTGAGAGAGAGGTACAAGAAGAAGAAGAATCAAACTTAGAC 2268
Query 2272 AAG-CTTACTAAGGAAACAACAAAACAAACAGAAAATGAGGTACATCAAAGTGATTTAGA 2330
||| || ||| |||||||||||||| ||||||||| ||| | | ||| |||
Sbjct 2269 AAGTCT-ACTGAGGAAACAACAAAAGAAACAGAAAGTGA--T---T-----TGA---AGA 2314
Query 2331 GAGTTCTCCATGCCAAGTT-CTTACAGAATTACTAGTAAGTGAGATTATGgaagagaatg 2389
| |||||| | |||||| || ||||||||||||| ||||| | | | |||||||||||
Sbjct 2315 G--TTCTCCGGGACAAGTTTCT-ACAGAATTACTAGAAAGTGTGGTAAGGGAAGAGAATG 2371
Query 2390 gtcaggaattag--aagaaga----a-gagaaaccaagg-tcagtagaagaagagaaAAC 2441
|||||||||||| || ||| | |||||| ||| | | |||||| |||||||| ||
Sbjct 2372 GTCAGGAATTAGTCAA-AAGTGCTGATGAGAAAGCAATGCT-AGTAGAGGAAGAGAAGAC 2429
Query 2442 TCATAATGTGGTGGAAGAATCTTCGAGCCATGCTCATACACAGTTGGTTGA---AGATTA 2498
||||||||| |||||| |||||||||| |||||||||||||||||||||| ||| ||
Sbjct 2430 TCATAATGTCTTGGAAGCATCTTCGAGCAATGCTCATACACAGTTGGTTGATTTAGACTA 2489
Query 2499 TGGAAACGAAGAAAATGCTAGTGATGTGATACTTCTGCAATTTCAAGATAGTAATAACTC 2558
|||||||| ||||||| ||||||||||||||||||||||| | ||||||||| |||| ||
Sbjct 2490 TGGAAACGCAGAAAATTCTAGTGATGTGATACTTCTGCAAGTCCAAGATAGTCATAAGTC 2549
Query 2559 ACCACTAGATGAGTCAACTGATCAGGAGGTCTCTAAGGAAGGAGAAAAAACAGAGTTATT 2618
|||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 2550 ACCACTAGATGAGTCAGTTGATCAGGAGATCTCTAAGGAAGTAGAAAAAACAGAGTTATT 2609
Query 2619 GGAAGATTTTTACGGTGAATCTTCTGAAGTATACAAAAATAGAGCGAA-TGCTGAGGTCT 2677
||||||||| |||||||| | ||| |||||||||||||| ||| || ||||| ||
Sbjct 2610 AAAAGATTTTTGTGGTGAATCAACCCAAGAATACAAAAATAGAG-GAAATGTTGAGGCCT 2668
Query 2678 ATGGAAACGCAGAAAACGCTAGTGATGTGACATTTCTGCAAGTCCAAGATGGTAATTACT 2737
||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |||
Sbjct 2669 GTGGAAACGCAGAAAATGCTAGTGATGTGTTACTTCTGCAAGTCCAAGATGGTAATAACT 2728
Query 2738 CACCACGAGATGAGT 2752
|||||| ||||||||
Sbjct 2729 CACCACTAGATGAGT 2743
Score = 632 bits (342), Expect = 6e-180
Identities = 443/490 (90%), Gaps = 14/490 (3%)
Strand=Plus/Plus
Query 2749 GAGTTATTGAAAGATTTCT-ATGATGAATCGTCCCAAGAATACAAAAATAGAGCTAATGT 2807
||| ||||||||||||| | |||||||| || |||||| ||||||||||||||| |||||
Sbjct 2782 GAGGTATTGAAAGATTT-TAATGATGAAACGCCCCAAGGATACAAAAATAGAGCCAATGT 2840
Query 2808 TGAGGAAGAATCAGTAGTTTTAGCCAACACTCAAAACTCACAAGATTCACAAACATGGAC 2867
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2841 TGAGGAAGAATCAGTAGTTTTAGCTGACACTCAAAACTCACAAGATTCACAAACATGGAC 2900
Query 2868 TCAACAGTGTGGTATAGATTCTTCCCAAGGGATATCACCAAGAACGTTGGAGATCACCCA 2927
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2901 TCAACAGTGTGGTATAGATTCTTCCCAAGGGATATCACCAAGAACATTGGAGATCACCCA 2960
Query 2928 ACAACTAGAGAAAGACGATGTTATTG----AT-C-CAAATGCCATCTCTCAAGTTATTGA 2981
||||||||| ||||||||||||||| | | |||| || ||||||||| ||| |
Sbjct 2961 GCAACTAGAGCAAGACGATGTTATTGCCTCTTCCTCAAACACCGTCTCTCAAGATATCAA 3020
Query 2982 TACAGATGAATT--TGCTGCAGTAGGCAACGACGTAGCTGCTAGTGAGAGTAATGATGAA 3039
|| |||| ||| || ||||||| ||| ||| |||||||||||||||| |||||||||
Sbjct 3021 TAAAGAT--ATTACCGCGGCAGTAGCCAATGACTTAGCTGCTAGTGAGAGGAATGATGAA 3078
Query 3040 GAAATTCTGAAACTTGATGAGCAAGATGGAGTAGCTATGGAAAAGGAACTAGAGCTTAAT 3099
| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 3079 GTGATTCTGAAACTTGATGAGCAAGTTGGAGAAGCTATGGAAAAGGAACTAGAGCTTAAT 3138
Query 3100 TTAGAATCACTGCATCATAACACTGGTTTAGTCGCTAGAGAAGACGATGAAGAATCCAAG 3159
|||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 3139 TTAGAATCACTGCACCATAATATTGGTTTAGTCGGTAGAGAAGACGATGAAGAATCCAAG 3198
Query 3160 AAAGTAATAGAGGAAATGCAAAATGCAGG-GATCCAAACAACAAAAGACGAAAACAGAGT 3218
|||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||
Sbjct 3199 AAAGTAATAGAGGAAATGCAAAATGC-GGAGATCCAAACAACAAAACACGAAAACAGAGT 3257
Query 3219 CTTAGGTTAG 3228
||||||||||
Sbjct 3258 CTTAGGTTAG 3267
Score = 209 bits (113), Expect = 1e-52
Identities = 155/176 (88%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 2499 TGGAAACGAAGAAAATGCTAGTGATGTGATACTTCTGCAATTTCAAGATAGTAATAACTC 2558
|||||||| ||||||||||||||||||| ||||||||||| | |||||| ||||||||||
Sbjct 2670 TGGAAACGCAGAAAATGCTAGTGATGTGTTACTTCTGCAAGTCCAAGATGGTAATAACTC 2729
Query 2559 ACCACTAGATGAGTCAACTGATCAGGAGGTCTCTAAGGAAGGAGAAAAAACAGAGTTATT 2618
|||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||
Sbjct 2730 ACCACTAGATGAGTCAACTGATCAGGAGATTTCTAAGGAAGAAGAAAAAACAGAGGTATT 2789
Query 2619 GGAAGATTTTTACGGTGAATCTTCTGAAGTATACAAAAATAGAGCGAATGCTGAGG 2674
| |||||||| | | |||| | | ||| ||||||||||||||| |||| |||||
Sbjct 2790 GAAAGATTTTAATGATGAAACGCCCCAAGGATACAAAAATAGAGCCAATGTTGAGG 2845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160584384543
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5