BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917629
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT2G17970.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1168 0.0
> AT2G17970.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr2:7818940-7821373
REVERSE LENGTH=1797
Length=1797
Score = 1168 bits (632), Expect = 0.0
Identities = 763/827 (92%), Gaps = 5/827 (1%)
Strand=Plus/Plus
Query 65 AGGAGAGGGATTCGGGTAGGAAAGGTTTTGATGCGAGTTCGAT---GACTCCCGAGAAGC 121
|||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 570 AGGAGAGGGATTCGAGTAGGAAAGGTTTTGATGCGAGTTCGATGAAGACTCCAGAGAAGC 629
Query 122 CGAAGTTGTCTAGAGAGCAGAGAGAGAATCTCAGGCTGATGCATGTGAAGAGAAAGAAAG 181
| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 630 CTAAGTTGTCTAGAGATCAGAGAGAGAATCTCAGGCTGATTAATGTGAAGAGAAAGAAAG 689
Query 182 ACTTCATTTGCATT-GAGAGAGTTAAGGAAAAGATCGTTAACGTGCTTGATGGACTTGAG 240
|||| |||||| || ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 690 ACTTTATTTGC-TTGGAGAGAGTTAAGGGAAAGATTGTTAACGTGCTTGATGGACTTGAG 748
Query 241 TTACACACTGGTGTGTTTAGCGCAGTGGAGCAGAAACGGATTGTAAATCAAGTGTATCAA 300
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 749 TTGCACACTGGTGTTTTTAGCGCAGTGGAGCAGAAACGGATTGTTGATCAAGTGTATCAA 808
Query 301 CTTCAAGAGAAGGGACGAAAAGGAGAACTTAGAGAGCATACATTTAATGCTCCACGGAAG 360
||||||||||||||||||| ||||||||||| | ||| |||||||| |||||||| |||
Sbjct 809 CTTCAAGAGAAGGGACGAAGAGGAGAACTTAAAAAGCGTACATTTACTGCTCCACATAAG 868
Query 361 TGGATGAGAGGCAAAGGACGTGTGACTATACAATTTGGTTGTTGTTACAACTACGCTATA 420
||||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||| |
Sbjct 869 TGGATGAGAGGAAAAGGACGTGAGACTATACAATTTGGCTGTTGCTACAACTACGCTCCA 928
Query 421 GATAGAGCTGGAAACCCACCTGGTATCCTTCAACGTGAAGAAGTGGATCCATTACCTCCG 480
|| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 929 GACAGAGCTGGAAACCCACCGGGTATCCTTCAACGTGAAGAAGTGGATCCACTACCTCAT 988
Query 481 CTTTTCAAAGTGATGATTAGAAGGTTGATTAAATGGCATGTACTGCCTCCAACTTGTGTG 540
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 989 CTTTTCAAAGTAATCATTAGAAAGTTGATTAAATGGCATGTACTGCCTCCAACTTGTGTG 1048
Query 541 CCCGATAGTTGCATTGTTAACATATATGATGAAGGTGACTGTATACCACCTCATATCGAT 600
|||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 1049 CCCGATAGCTGCATTGTGAACATCTATGATGAAGGTGACTGCATACCTCCTCACATCGAC 1108
Query 601 AACCACGACTTTCTCCGTCCGTTCTGCACCATCTCTTTCCTCAGTGAATGTGATATCCTT 660
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 1109 AACCACGACTTTCTCCGTCCCTTCTGTACCATCTCTTTCCTCAGTGAATGCGATATCCTC 1168
Query 661 TTTGGCTCAAACCTGAAAACTGAAGGTCCTGGTGAATTCTCGGGTCCATACTCAATACCG 720
|||||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 1169 TTTGGCTCAAACCTGAAAGTTGAGGGTCCTGGTGACTTCTCGGGTTCATACTCAATACCG 1228
Query 721 CTTCCTGTCGGATCAGTTCTGGTGTTAAATGGAAATGGGGCTGATGTAGCCAAGCACTGT 780
|||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1229 CTTCCTGTGGGATCAGTTCTGGTGTTAAATGGAAATGGAGCTGATGTAGCTAAGCACTGT 1288
Query 781 GTACCTGCAGTTCCCACAAAAAGGATATCAATCACATTTAGGAAAATGGATGAATCGAAA 840
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1289 GTACCTGCAGTTCCTACAAAAAGGATATCAATTACATTTAGGAAAATGGATGAGTCGAAA 1348
Query 841 CGCCCGGTTTGGTTCACTCCAGAGCCTGATTTGCAAGGAATCGAGCC 887
||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1349 CGCCCGGTTTGGTTCACCCCAGAGCCTGATTTGCAAGGGATTGAGCC 1395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5