BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917651
Length=393
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59170.1 | Symbols: | Proline-rich extensin-like family pro... 318 2e-86
> AT5G59170.1 | Symbols: | Proline-rich extensin-like family protein
| chr5:23881988-23883122 FORWARD LENGTH=1135
Length=1135
Score = 318 bits (172), Expect = 2e-86
Identities = 242/275 (88%), Gaps = 7/275 (3%)
Strand=Plus/Plus
Query 124 GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACCGCCGACTT- 182
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 627 GAAGTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCTCCGCC-AATTA 685
Query 183 A-CCCTCATCCACCG-GTG-A-AGTATCCACCGCCGATCAAGACTTACCCTCATCCGCCG 238
| | |||| ||| | | |||||||||| |||||||||||||| |||||||| ||
Sbjct 686 AGAAGT-ATCCTCCGCCAGAAGAGTATCCACCACCGATCAAGACTTATCCTCATCCCCCT 744
Query 239 GTGAAGTATCCACCACCTCCGTACAAGACTTACCCTCATCCGCCGATCAAGACGTATCCT 298
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 745 GTGAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCCGCCGATCAAAACTTATCCT 804
Query 299 CCTCCGAAGGAATGTCCTCCTCCGCCGGTACATTACCCTTTTCCCCCGATCAAGAAATAT 358
|||||||| ||||||||||||||||| | ||||||||||| || |||| |||||||||
Sbjct 805 CCTCCGAAAGAATGTCCTCCTCCGCCTGAACATTACCCTTGGCCTCCGAAAAAGAAATAT 864
Query 359 CCTCCACCGGTTGTGTATCCGTCGCCACCATATAA 393
||||||||||||| |||||||||||| ||||||||
Sbjct 865 CCTCCACCGGTTGAGTATCCGTCGCCGCCATATAA 899
Score = 167 bits (90), Expect = 8e-41
Identities = 119/133 (89%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 124 GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACCGCCGA-CTT 182
||| |||||||| || | ||||||||||| ||||||||||||||||||||||| | | |
Sbjct 237 GAAATATCCTCCACCGGTGCAGTATCCACCACCGATCAAGAAGTATCCACCGCC-ACCAT 295
Query 183 ACCCTCATCCACCGGTGAAGTATCCACCGCCGATCAAGACTTACCCTCATCCGCCGGTGA 242
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 296 ACGAGCATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGA 355
Query 243 AGTATCCACCACC 255
||||||| |||||
Sbjct 356 AGTATCCTCCACC 368
Score = 148 bits (80), Expect = 3e-35
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 71 CATCCGCCGGTGAAATATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAGTAT 130
||||| |||||||| ||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 301 CATCCACCGGTGAAGTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGAAGTAT 360
Query 131 CCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCC 171
||||| ||||||||||||||||||||||| |||||||||||
Sbjct 361 CCTCCACCAGAACAGTATCCACCGCCGATTAAGAAGTATCC 401
Score = 106 bits (57), Expect = 2e-22
Identities = 144/183 (79%), Gaps = 18/183 (10%)
Strand=Plus/Plus
Query 1 GTATCCTCCGCCGATCAAAACTTACCCTCATCCGCCGGTGAAGTATCCTCCGCCGATCAA 60
|||||| || |||||||| |||||||||||||||||||||||||||||||| || | ||
Sbjct 315 GTATCCACCACCGATCAAGACTTACCCTCATCCGCCGGTGAAGTATCCTCCACC-AG-AA 372
Query 61 AACTTACCCTCATCCGCCGGTGAA-A--TATCCTCCGCCGATCAAAACTTACCCTCATCC 117
| | | || | |||||| | || | |||||||| || | || | | | || | ||
Sbjct 373 CAGT-ATCC--A-CCGCCGATTAAGAAGTATCCTCCACC-AG-AACAGT-ATCC--A-CC 422
Query 118 GCCGGT---GAAGTATCCTCCCCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCACC 174
|||| | |||||||||||| |||||||||||| ||||||| ||||||||||||| ||
Sbjct 423 GCCGATTAAGAAGTATCCTCCACCAGAACAGTATTCACCGCCTTTCAAGAAGTATCCTCC 482
Query 175 GCC 177
|||
Sbjct 483 GCC 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18548799381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5