BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917652

Length=207
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59170.1 | Symbols:  | Proline-rich extensin-like family pro...   174    2e-43


> AT5G59170.1 | Symbols:  | Proline-rich extensin-like family protein 
| chr5:23881988-23883122 FORWARD LENGTH=1135
Length=1135

 Score =  174 bits (94),  Expect = 2e-43
 Identities = 116/127 (91%), Gaps = 0/127 (0%)
 Strand=Plus/Plus

Query  20   GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATA  79
            |||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||| ||
Sbjct  435  GTATCCTCCACCAGAACAGTATTCACCGCCTTTCAAGAAGTATCCTCCGCCAGAACAGTA  494

Query  80   TCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTA  139
            |||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct  495  TCCACCACCGATCAAGAAGTATCCTCCGCCAGAACATTATCCACCGCCGATAAAAAAGTA  554

Query  140  CCCACCG  146
             || |||
Sbjct  555  TCCTCCG  561


 Score =  169 bits (91),  Expect = 1e-41
 Identities = 116/128 (91%), Gaps = 2/128 (2%)
 Strand=Plus/Plus

Query  20   GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAA-T  78
            ||||||||| | |||||| |||||||| ||||| || |||||||||||||||||| || |
Sbjct  552  GTATCCTCCGCAAGAACAGTATCCACCACCGATTAAAAAGTATCCTCCGCCAGAA-AAGT  610

Query  79   ATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGT  138
            ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  611  ATCCACCCCCGATCAAGAAGTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGT  670

Query  139  ACCCACCG  146
            | || |||
Sbjct  671  ATCCTCCG  678


 Score =  163 bits (88),  Expect = 5e-40
 Identities = 114/127 (90%), Gaps = 0/127 (0%)
 Strand=Plus/Plus

Query  20   GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATA  79
            ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct  474  GTATCCTCCGCCAGAACAGTATCCACCACCGATCAAGAAGTATCCTCCGCCAGAACATTA  533

Query  80   TCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAATATCCACCGCCGATCAAGAAGTA  139
            |||||||||||| || ||||||||||||| |||||| |||||||| ||||| || |||||
Sbjct  534  TCCACCGCCGATAAAAAAGTATCCTCCGCAAGAACAGTATCCACCACCGATTAAAAAGTA  593

Query  140  CCCACCG  146
             || |||
Sbjct  594  TCCTCCG  600


 Score =  147 bits (79),  Expect = 5e-35
 Identities = 133/157 (85%), Gaps = 11/157 (7%)
 Strand=Plus/Plus

Query  20   GTATCCTCCACCAGAACAA-TATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAAT  78
            ||||||||| |||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct  591  GTATCCTCCGCCAGAA-AAGTATCCACCCCCGATCAAGAAGTATCCTCCGCCAGAACAGT  649

Query  79   ATCCACCGCCGATCAAGAAGTATCCTCCGCCAG--AACAA-TATCCACCGCCGATCAAGA  135
            ||||||||||||||||||||||||||||||||   || || ||||| ||||| |  ||||
Sbjct  650  ATCCACCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAAGTATCCTCCGCC-AG-AAGA  707

Query  136  AGTACCCACCGTCGCCGTACGAGACTTACCCTCATCC  172
             ||| |||||  ||   | | ||||||| ||||||||
Sbjct  708  -GTATCCACCACCGA--T-CAAGACTTATCCTCATCC  740


 Score =  124 bits (67),  Expect = 2e-28
 Identities = 154/192 (80%), Gaps = 22/192 (11%)
 Strand=Plus/Plus

Query  20   GTATCCTCCACCAGAACAATATCCACCGCCGATCAAGAAGTATCCTCCGCCAG--AACAA  77
            ||||||||| |||||||| |||||||||||||||||||||||||||||||||   || ||
Sbjct  630  GTATCCTCCGCCAGAACAGTATCCACCGCCGATCAAGAAGTATCCTCCGCCAATTAAGAA  689

Query  78   -TATCCACCGCCGATCAAGAAGTATCCTCCGCCAGAACAA---T-ATCC--A-CCGCC-G  128
             ||||| ||||| |  |||| |||||| || || || |||   | ||||  | || || |
Sbjct  690  GTATCCTCCGCC-AG-AAGA-GTATCCACCACC-GATCAAGACTTATCCTCATCCCCCTG  745

Query  129  ATCAAGAAGTACCCACCGTCGCCGTACGAGACTTACCCTCATCCACCGCCGATCAAAACT  188
             |   |||||| |||||| | |||||| ||||||||||||||||   |||||||||||||
Sbjct  746  -T---GAAGTATCCACCGCCTCCGTACAAGACTTACCCTCATCC---GCCGATCAAAACT  798

Query  189  TACCCTCATCCG  200
            || |||| ||||
Sbjct  799  TATCCTCCTCCG  810



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9255448584


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5