BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917675
Length=348
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59330.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 436 5e-122
AT5G59320.1 | Symbols: LTP3 | lipid transfer protein 3 | chr5:2... 383 6e-106
AT5G59310.1 | Symbols: LTP4 | lipid transfer protein 4 | chr5:2... 318 2e-86
> AT5G59330.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:23931318-23931889
FORWARD LENGTH=424
Length=424
Score = 436 bits (236), Expect = 5e-122
Identities = 315/349 (90%), Gaps = 22/349 (6%)
Strand=Plus/Plus
Query 1 ATGGCTTTGGCTCTCAAGTTCTTCATATGCTTCGTTTTGACGGTGTGCATAGTTGCATCA 60
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 97 ATGGCTTTGGCTCTCAGGTTCTTCATATGCTTCGTTTTGACGGTGTGCATAGTTTCATCA 156
Query 61 GTAGATGCAGCAATCTCATGTGCCACAGTGGTAAGTAACTTGGCTCCATGTGTCAACTAC 120
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 157 GTAGATGCAGAAATCTCATGTGGCACAGTGGTAAGTAACTTGGCTCCATGTGCCAACTAC 216
Query 121 CTATCAAAAGGTGGTGTGGTACCGGATCTGTGTTGCGAAGGAGTTCAAAAGTTGAACGGT 180
|| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 217 CTTTCAAAAGGTGGTGTGGTACCGGATCTGTGTTGTGAAGGAGTTGAAAAGTTGAACGGT 276
Query 181 ATGGCTCAAACCACACCGGACCGCCAACAAGCATGCAAATGCCTACAGTCCACTGCAAAG 240
|||||||||||| | ||| | ||| | ||||||||| |||||||
Sbjct 277 GTGGCTCAAACCAT---G--CCG--A-------TGC-----C-TACAGTCCATTGCAAAG 316
Query 241 GGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGTCTTCCTGGAA-AGTGCGGTGTTAG 299
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 317 GGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGTCTTCCTG-AAGAGTGCGGTGTTAG 375
Query 300 CATTCCCTATCCCATTTCCTTGAGCACTAACTGCGACAACGTCAAGTGA 348
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 376 CATTCCCTATCCCATTTCCTTGAGCACTAACTGCGACAACGTCGAGTGA 424
> AT5G59320.1 | Symbols: LTP3 | lipid transfer protein 3 | chr5:23928971-23929745
FORWARD LENGTH=681
Length=681
Score = 383 bits (207), Expect = 6e-106
Identities = 307/354 (87%), Gaps = 12/354 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTTGGCTCTCAAGTTCTTCATATG-CTTCGTTTTGACGGTGTGCATAGTTGCATC 59
|||||||| ||| | | |||||||| ||| ||| ||||| ||||||||||||||||||||
Sbjct 81 ATGGCTTTCGCTTTGAGGTTCTTCACATGCCTT-GTTTTAACGGTGTGCATAGTTGCATC 139
Query 60 AGTAGATGCAGCAATCTCATGTGCCACAGTGGTAAGTAACTTGGCTCCATGTGTCAA-CT 118
||| ||||| ||||||||||||| |||||||| | ||| |||||||||||||| ||| ||
Sbjct 140 AGTCGATGCTGCAATCTCATGTGGCACAGTGGCAGGTAGCTTGGCTCCATGTG-CAACCT 198
Query 119 ACCTATCAAAAGGT-GGTGTGGTACCGGATC-T-GTGTTGCGAAGGAGTTCAAAA-GTTG 174
| |||||||||||| ||| |||| || | | | ||||| | ||||| |||||| |||
Sbjct 199 ATCTATCAAAAGGTGGGT-TGGTGCC--ACCTTCATGTTGTGCAGGAG-TCAAAACTTTG 254
Query 175 AACGGTATGGCTCAAACCACACCGGACCGCCAACAAGCATGCAAATGCCTACAGTCCACT 234
||| |||||||| |||||||||| |||||||||||||| |||| |||| | |||||||||
Sbjct 255 AACAGTATGGCTAAAACCACACCAGACCGCCAACAAGCTTGCAGATGCATCCAGTCCACT 314
Query 235 GCAAAGGGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGTCTTCCTGGAAAGTGCGGT 294
|| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 315 GCGAAGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCTTCCTGGAAAGTGCGGT 374
Query 295 GTTAGCATTCCCTATCCCATTTCCTTGAGCACTAACTGCGACAACGTCAAGTGA 348
||||||||||| ||||| || ||| |||||||||||||| ||||| ||||||||
Sbjct 375 GTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAACATCAAGTGA 428
> AT5G59310.1 | Symbols: LTP4 | lipid transfer protein 4 | chr5:23925085-23925852
REVERSE LENGTH=630
Length=630
Score = 318 bits (172), Expect = 2e-86
Identities = 294/351 (84%), Gaps = 15/351 (4%)
Strand=Plus/Plus
Query 1 ATGGCTTTGGCTCTCAAGTTCTTCATATGCTTCGTTTTGACGGTGTGCATAGTTGCATCA 60
|||||||| ||| | | |||||||| |||||| |||||||| |||| ||| |||||||||
Sbjct 81 ATGGCTTTCGCTTTGAGGTTCTTCACATGCTTTGTTTTGACAGTGTTCATCGTTGCATCA 140
Query 61 GTAGATGCAGCAATCTCATGTGCCACAGTGGTAAGTAACTTG-GCTCCATGTGTCA-ACT 118
|| ||||||||||| |||||| |||||||| ||||| |||| | ||||||| | | ||
Sbjct 141 GTGGATGCAGCAATAACATGTGGCACAGTGGCAAGTAGCTTGAG-TCCATGTCT-AGGCT 198
Query 119 ACCTATCAAAAGGTGGTGTGGTACCGGATCTGTGTTGCGAAGGAGTTC-AAAAGTTGAAC 177
|||||||||| ||||| ||||| || || ||| || | ||||| || |||||||||||
Sbjct 199 ACCTATCAAAGGGTGGGGTGGTGCCACCTCCGTGCTGTGCAGGAG-TCAAAAAGTTGAAC 257
Query 178 GGTATGGCTCAAACCACACCGGACCGCCAACAAGCATGCAAATGCCTACAGTCCACTGCA 237
|||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||||
Sbjct 258 GGTATGGCTCAAACCACACCCGACCGCCAACAAGCATGCAGATGCTTACAGTCCGCTGCA 317
Query 238 AAGGGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGTCTTCCTGGAAAGTGCGGTGTT 297
|| || ||| | || ||||||||||||||||| |||||||||||||||||||||
Sbjct 318 AAAGG-------GGT-T-AATCCAAGTCTAGCCTCTGGCCTTCCTGGAAAGTGCGGTGTT 368
Query 298 AGCATTCCCTATCCCATTTCCTTGAGCACTAACTGCGACAACGTCAAGTGA 348
||||| ||||||||||| ||| |||||| ||||||| || | ||||||||
Sbjct 369 AGCATCCCCTATCCCATCTCCACGAGCACCAACTGCGCCACCATCAAGTGA 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16286750676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5