BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg917676 Length=786 Score E Sequences producing significant alignments: (Bits) Value AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5... 850 0.0 > AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:23933404-23934690 REVERSE LENGTH=850 Length=850 Score = 850 bits (460), Expect = 0.0 Identities = 699/807 (87%), Gaps = 45/807 (6%) Strand=Plus/Plus Query 1 ATGGAAAACGAAGGAAACGTTGGAACGGCAAGCAGTTCACGATGGAACCCAACAAAAGAT 60 ||||||||||||| ||||| ||||| |||||||||||| ||||||||||||| |||||| Sbjct 64 ATGGAAAACGAAGTAAACGCAGGAACAGCAAGCAGTTCAAGATGGAACCCAACGAAAGAT 123 Query 61 CAGATAACGCTACTGGAAAATCTTTACAAGCAAGGAATACGAACTCCGAGCGCCGATCAG 120 ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 124 CAGATCACGCTACTGGAAAATCTTTACAAGGAAGGAATACGAACTCCGAGCGCCGATCAG 183 Query 121 ATTCAGCAGATCACCGGCAGGCTCCGTGCGTACGGCCATATCGAGGGTAAAAACGTCTTT 180 ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| Sbjct 184 ATTCAGCAGATCACCGGTAGGCTTCGTGCGTACGGCCATATCGAAGGTAAAAACGTCTTT 243 Query 181 TACTGGTTTCAGAACCATAAGGCTAGACAACGCCAAAAGCAGAAACAGGAGCGCATGGCT 240 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 244 TACTGGTTCCAGAACCATAAGGCTAGGCAACGCCAAAAGCAGAAACAGGAGCGCATGGCT 303 Query 241 TACTTCAATCGTCTCCTCCACAAAACCTCCCGTTTCTTCCACCCTCCTCCTTGTTCAAAC 300 ||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||| Sbjct 304 TACTTCAATCGCCTCCTCCACAAAACCTCCCGTTTCTTCTACCCCCCTCCTTGCTCAAAC 363 Query 301 GGCACATTTCTTCCGTTTTCTTTGGGTTGTGTTAGTCCGTACTATTTGCAGCAAGTAGGT 360 | | | || |||||| |||||||||||||| ||||||| | || Sbjct 364 G-----T-------G--------GG-TTGTGTCAGTCCGTACTATTTACAGCAAGCAAGT 402 Query 361 --T--TGA-ATCAG-CAACATGGAAGTGTATACACAAACGATCTTCTTCACAGTAACGAT 414 | | | || | |||||||||||||||||||||||||||||||||||||| ||| || Sbjct 403 GATCATCATATGAATCAACATGGAAGTGTATACACAAACGATCTTCTTCACAGAAACAAT 462 Query 415 ATGATGATTCCAAGTGGTGGCTACGAGAAACGGACAACCACAGAACATAAGAAACAACTT 474 ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| Sbjct 463 GTGATGATTCCAAGTGGTGGCTACGAGAAACGGACAGTCACACAACATCAGAAACAACTT 522 Query 475 TCAGAC-T-----CAACATCA---ACTAGAATGCCAATGTCTTCGAGCTCACTCAGATAT 525 |||||| | ||||| || || ||||||||||| ||| |||| |||||||||| | Sbjct 523 TCAGACATAAGAACAACAGCAGCCACAAGAATGCCAATTTCTCCGAGTTCACTCAGATTT 582 Query 526 GACAGATTTGCCCTTCGTGATCACTGTTATTACGGTGAGGGCATTAACGGCAATTCCAGT 585 |||||||||||||| |||||| |||||||| |||||||| |||||||| |||||||||| Sbjct 583 GACAGATTTGCCCTCCGTGATAACTGTTATGCCGGTGAGGACATTAACGTCAATTCCAGT 642 Query 586 GGGCGGAAAACACTTCCTCTTTTTCCACTTCAGCCTTTGGATGCCACTAATGAC-GATGG 644 || ||||||||||| ||||||||||| |||||||||||| |||| | ||||| | ||||| Sbjct 643 GGACGGAAAACACTCCCTCTTTTTCCTCTTCAGCCTTTGAATGCAAGTAATG-CTGATGG 701 Query 645 TGTTGGAAATTCCAGTTTTGCCCTTGGTAGTGATTCTCCGGGTGT-TTGTTCTGGCGACG 703 | | |||| |||||||||||||||||||||||||||||||| || ||||||| |||| | Sbjct 702 TATGGGAAGTTCCAGTTTTGCCCTTGGTAGTGATTCTCCGG-TGGATTGTTCTAGCGATG 760 Query 704 GTGGCGGCCGAGAGCAGCCGTTTATTGATTTCTTTTCTGGTGGGACTAGT-CGT--T-GT 759 | | ||||||||||||||||||||||||||||||||||||||| ||| | | | | || Sbjct 761 GAGCCGGCCGAGAGCAGCCGTTTATTGATTTCTTTTCTGGTGGTTCTACTTC-TACTCGT 819 Query 760 TTCGATAGTAGTGGAAATGCGTTGTAA 786 |||||||||| ||| |||| ||||||| Sbjct 820 TTCGATAGTAATGGTAATGGGTTGTAA 846 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38228185867 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5