BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917676
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5... 850 0.0
> AT5G59340.1 | Symbols: WOX2 | WUSCHEL related homeobox 2 | chr5:23933404-23934690
REVERSE LENGTH=850
Length=850
Score = 850 bits (460), Expect = 0.0
Identities = 699/807 (87%), Gaps = 45/807 (6%)
Strand=Plus/Plus
Query 1 ATGGAAAACGAAGGAAACGTTGGAACGGCAAGCAGTTCACGATGGAACCCAACAAAAGAT 60
||||||||||||| ||||| ||||| |||||||||||| ||||||||||||| ||||||
Sbjct 64 ATGGAAAACGAAGTAAACGCAGGAACAGCAAGCAGTTCAAGATGGAACCCAACGAAAGAT 123
Query 61 CAGATAACGCTACTGGAAAATCTTTACAAGCAAGGAATACGAACTCCGAGCGCCGATCAG 120
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 124 CAGATCACGCTACTGGAAAATCTTTACAAGGAAGGAATACGAACTCCGAGCGCCGATCAG 183
Query 121 ATTCAGCAGATCACCGGCAGGCTCCGTGCGTACGGCCATATCGAGGGTAAAAACGTCTTT 180
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 184 ATTCAGCAGATCACCGGTAGGCTTCGTGCGTACGGCCATATCGAAGGTAAAAACGTCTTT 243
Query 181 TACTGGTTTCAGAACCATAAGGCTAGACAACGCCAAAAGCAGAAACAGGAGCGCATGGCT 240
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 244 TACTGGTTCCAGAACCATAAGGCTAGGCAACGCCAAAAGCAGAAACAGGAGCGCATGGCT 303
Query 241 TACTTCAATCGTCTCCTCCACAAAACCTCCCGTTTCTTCCACCCTCCTCCTTGTTCAAAC 300
||||||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct 304 TACTTCAATCGCCTCCTCCACAAAACCTCCCGTTTCTTCTACCCCCCTCCTTGCTCAAAC 363
Query 301 GGCACATTTCTTCCGTTTTCTTTGGGTTGTGTTAGTCCGTACTATTTGCAGCAAGTAGGT 360
| | | || |||||| |||||||||||||| ||||||| | ||
Sbjct 364 G-----T-------G--------GG-TTGTGTCAGTCCGTACTATTTACAGCAAGCAAGT 402
Query 361 --T--TGA-ATCAG-CAACATGGAAGTGTATACACAAACGATCTTCTTCACAGTAACGAT 414
| | | || | |||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 403 GATCATCATATGAATCAACATGGAAGTGTATACACAAACGATCTTCTTCACAGAAACAAT 462
Query 415 ATGATGATTCCAAGTGGTGGCTACGAGAAACGGACAACCACAGAACATAAGAAACAACTT 474
||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||
Sbjct 463 GTGATGATTCCAAGTGGTGGCTACGAGAAACGGACAGTCACACAACATCAGAAACAACTT 522
Query 475 TCAGAC-T-----CAACATCA---ACTAGAATGCCAATGTCTTCGAGCTCACTCAGATAT 525
|||||| | ||||| || || ||||||||||| ||| |||| |||||||||| |
Sbjct 523 TCAGACATAAGAACAACAGCAGCCACAAGAATGCCAATTTCTCCGAGTTCACTCAGATTT 582
Query 526 GACAGATTTGCCCTTCGTGATCACTGTTATTACGGTGAGGGCATTAACGGCAATTCCAGT 585
|||||||||||||| |||||| |||||||| |||||||| |||||||| ||||||||||
Sbjct 583 GACAGATTTGCCCTCCGTGATAACTGTTATGCCGGTGAGGACATTAACGTCAATTCCAGT 642
Query 586 GGGCGGAAAACACTTCCTCTTTTTCCACTTCAGCCTTTGGATGCCACTAATGAC-GATGG 644
|| ||||||||||| ||||||||||| |||||||||||| |||| | ||||| | |||||
Sbjct 643 GGACGGAAAACACTCCCTCTTTTTCCTCTTCAGCCTTTGAATGCAAGTAATG-CTGATGG 701
Query 645 TGTTGGAAATTCCAGTTTTGCCCTTGGTAGTGATTCTCCGGGTGT-TTGTTCTGGCGACG 703
| | |||| |||||||||||||||||||||||||||||||| || ||||||| |||| |
Sbjct 702 TATGGGAAGTTCCAGTTTTGCCCTTGGTAGTGATTCTCCGG-TGGATTGTTCTAGCGATG 760
Query 704 GTGGCGGCCGAGAGCAGCCGTTTATTGATTTCTTTTCTGGTGGGACTAGT-CGT--T-GT 759
| | ||||||||||||||||||||||||||||||||||||||| ||| | | | | ||
Sbjct 761 GAGCCGGCCGAGAGCAGCCGTTTATTGATTTCTTTTCTGGTGGTTCTACTTC-TACTCGT 819
Query 760 TTCGATAGTAGTGGAAATGCGTTGTAA 786
|||||||||| ||| |||| |||||||
Sbjct 820 TTCGATAGTAATGGTAATGGGTTGTAA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5