BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917681
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59390.1 | Symbols: | XH/XS domain-containing protein | chr... 1600 0.0
AT4G01180.1 | Symbols: | XH/XS domain-containing protein | chr... 1127 0.0
> AT5G59390.1 | Symbols: | XH/XS domain-containing protein | chr5:23954934-23957151
FORWARD LENGTH=1686
Length=1686
Score = 1600 bits (866), Expect = 0.0
Identities = 1126/1244 (91%), Gaps = 48/1244 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAATCAACAAAAGCAGGAATTTCTAGCTGAGACCTCAGCGAT---G-A-A-C 54
|||||||| ||||||||||||||||||||||||||||||||||||| ||| | | | |
Sbjct 1 ATGGAGAAAAATCAACAAAAGCAGGAATTTCTAGCTGAGACCTCAGAGATGAAGAACACC 60
Query 55 ---AACAACGACTGTTCTGAACAAGAACAACCACAACAACGATTTGTGTGGCCATGGGTT 111
||||||||| | ||| | | ||||| ||||||||||||||||||||||||||||
Sbjct 61 AAAAACAACGAC-G-ACTGTTC-TGTACAACAACAACAACGATTTGTGTGGCCATGGGTT 117
Query 112 GGTCTTGTAGCCAACATACCAACGGAGGTTGAACAATCTGGTCGGAGAGTAGGCAAAAGC 171
||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct 118 GGTCTAGTAGCCAACATACCAACGGAGGTGGAACCATCGGGTCGGAGAGTAGGCAAAAGC 177
Query 172 GGTTCTACGTTACGTGATGAGTTCACTCTGAAAGGGTTTAATCCTACAAGAGTCCAACCC 231
||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 178 GGTTCAACGTTACGTGATGAGTTCACTATGAAAGGGTTTAATCCAACAAGAGTCCAACCC 237
Query 232 ATTTGGAATTTCAAGGGACATTCTGGTTTTGCTTTGGTTGAATTCACTAAAGA-TTTCGA 290
|||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 238 ATTTGGGATTTCAAGGGTCATTCTGGTTTTGCTTTGGTTGAATTCGCTAAAGACTTT-GA 296
Query 291 AGGATTTGAATGCGCCATGAAATTT-GAAAGGAGTTTTGAA-ACAGACCGTCATGGGAAG 348
|||||| ||| |||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct 297 AGGATTCGAAAGCGCCATG-AATTTCGAAAGGAGTTTT-AATTTAGACCGTCATGGGAAG 354
Query 349 AGAGATTGGGAAAATGGT-ATTCGCTTGAGAGATAATAAGCTTTATGGATGGGTTGCGAG 407
|||||||||||||| ||| | |||||||||||| |||||||| |||||||||||||| ||
Sbjct 355 AGAGATTGGGAAAAAGGTCA-TCGCTTGAGAGACAATAAGCTCTATGGATGGGTTGCCAG 413
Query 408 AGAGGATGATTATAATCGAAGTGATATTGTTGGGAAGAATGTCAAGAAGAAGAGAGATTT 467
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 414 AGAGGATGATTATAATCGAAGTGATACTGTTGGGAAGAACGTCAAGAAGAAGAGAGATTT 473
Query 468 GAAAAGTAT-TGTGCAGATTATGGAAGAAGACGAGAGGAAAATGGTTCATCTAGTTGAGA 526
||||||||| | | |||||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 474 GAAAAGTATCTCT-CAGATTGTGGAGGAAGACGAGAGGAAAATGGTTCATCTTGTTGAGA 532
Query 527 ATATGTCTCAGTCGATTGAGATGAATAAGCAATGTAAACAAGAGCTTGAACAGAAAGTTG 586
|||||||||| | ||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 533 ATATGTCTCAAACCATTGAGAAGAAGAAGCAAAGTAAACAAGAGCTTGAACAGAAAGTTG 592
Query 587 ATGAGACTTCTCGTTTCCTAGAGAGTTTGGAATTGCATAACGTTCTGTTAAACAAAACCT 646
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||
Sbjct 593 ATGAGACTTCTCGTTTCTTGGAGAGTTTGGAATTGCATAACGTTCTGTTAAACAAAAACT 652
Query 647 ACCAAGAAGGGATTGAGAAGATGCAGATGAATATGGAAGAGTTGTATCAACAGGTTCTGG 706
||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 653 ACCAAGAAGGGTTTCAGAAGATGCAGATGAAGATGGAAGAGTTGTATCAACAGGTTCTGG 712
Query 707 GTGGACATGAAAAGTCTTTGGCAGAACTGGAGGCAAAGAGGGAGAAGCTGGACGAGCGTG 766
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 713 ATGGACATGAAAAGTCTTTGGCAGAACTGGAGGCAAAGAGGGAGAAGCTTGACGAGCGTG 772
Query 767 CAAGACTGATCGAGCAACGGGCAACCATAAACGAAGAAGAGATGGAAAAATCCAGACTTG 826
|||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||
Sbjct 773 CAAGACTGATCGAGCAACGGGCTATCATAAACGAAGAAGAGATGGAAAAGTCCAGACTTG 832
Query 827 AAAGAGAAATGAATCAAAAGGCTATGTGGGAGCAGAATGAAGCGAATGAGGAAGCTATGA 886
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 833 AAAGAGAAATGAATCAAAAGGCTATGTGTGAGCAGAATGAAGCGAATGAGGAAGCTATGA 892
Query 887 AACTTGCAGAAAAGCACCAGGCAAGTAGTTCTTTAGGTTGTCTGTATATTAATGAGCAAA 946
| ||||||||||||||||||||||||||||| | || | | || ||| ||
Sbjct 893 AGCTTGCAGAAAAGCACCAGGCAAGTAGTTC----G-TT------A-A--AA-GAG-AA- 935
Query 947 AAGAGAAGGAGAAGCTTCATAAAAGAATAATGGAAATGGAAGCGAAGCTAAATGAAACGC 1006
| || | | | |||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 936 --G-GA-G-A-A-GCTTCATAAAAGGATAATGGAAATGGAAGCTAAGCTAAATGAAACGC 988
Query 1007 AAGAGCTGGAGTTGGAGATAGAGAAGCTGAAAGGTACTACCAATGTAATGAAGCATATGG 1066
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 989 AAGAGCTGGAGTTGGAGATAGAGAAGCTGAAAGGTACTACAAATGTGATGAAGCATATGG 1048
Query 1067 TGGGGAGTGATGGAGATGAAGATATTGTGAAGAAGATGGCCAAAACTCAGATAGAGCTTG 1126
||||||||||||||||| ||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 1049 TGGGGAGTGATGGAGATAAAGATATTGTGGAGAAGATAGCCAAAACTCAGATTCAGCTTG 1108
Query 1127 ATGCTCGAGAAACGGCTCTCCATGACAAAATGATGACTCTGACA-GAAAAAGAACGTATG 1185
| |||| |||||||||||||||||| ||||||||||||||| || ||||| ||||||
Sbjct 1109 ACGCTCAAGAAACGGCTCTCCATGAAAAAATGATGACTCTGGCACGAAAA-GAACGTGCA 1167
Query 1186 ACCAACGATGAGTATCAAGACGCTCGTAAAGAGATGATTCAGGT 1229
|||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 1168 ACCAACGACGAGTATCAAGACGTTCTTAAAGAGATGATTCAGGT 1211
Score = 366 bits (198), Expect = 3e-100
Identities = 224/236 (95%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 1297 GATGA-GCAGGTATGGAATGCAAATGAAGAATTGATGAAGCAAGAGAAGATTAGAGTGAA 1355
||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1200 GATGATTCAGGTATGGAACGCCAATGAAGAGTTGATGAAGCAAGAGAAGATTAGAGTGAA 1259
Query 1356 GAGAATGGGGCAATTAAACCCTGAACCCTTCTTGCCTGCAGTGATGAAGAAACATAAAGT 1415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAGAATGGGGCAATTAAACCCTGCACCCTTCTTGCCTGCAGTGATGAAGAAACATAAAGT 1319
Query 1416 TACACAATCAAGAG-CAGAGATTAAGGCTATGCAGCTGTGTTCAGTGTGGGAAGCAAACA 1474
||||||||||| || |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1320 TACACAATCAA-AGGCAGAGAATAAGGCTATGAAGCTGTGTTCAGTGTGGGAAGCAAACA 1378
Query 1475 TAGGAGATGTGCAATGGACCCCATTTAGAGTCGATGAGTCTGATGGAACAGCAAAG 1530
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1379 TAGGAGATGTGCAATGGACTCCATTTAGAGTCGATGAGTCTGATGGAACACCAAAG 1434
> AT4G01180.1 | Symbols: | XH/XS domain-containing protein | chr4:501287-503394
REVERSE LENGTH=1665
Length=1665
Score = 1127 bits (610), Expect = 0.0
Identities = 817/914 (89%), Gaps = 25/914 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAATCAACAAAAGCAGGAATTTCTAGCTGAGACCTCAGCGATG---AACAAC 57
||| ||||||| |||||||||||||||||| |||||||||| |||| |||| ||||||
Sbjct 1 ATGAAGAAGAAACAACAAAAGCAGGAATTTGTAGCTGAGACATCAGAGATGAACAACAAC 60
Query 58 AACGACTGTTCTGAACAAGAACAACCACAACAACGATTTGTGTGGCCATGGGTTGGTCTT 117
||||| ||||||| |||||| ||| || || |||||| |||||||||||||||||||||
Sbjct 61 AACGAGTGTTCTGGACAAGACCAA-CA-AA-AACGATATGTGTGGCCATGGGTTGGTCTA 117
Query 118 GTAGCCAACATACCAACGGAGGTTGAACAATCTGGTCGGAGAGTAGGCAAAAGCGGTTCT 177
||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 118 GTAGCCAACGTACCAACTGAGGTGGAACCATCTGGTCGGAGAGTAGGCAAAAGCGGTTCA 177
Query 178 ACGTTACGTGATGAGTTCACTCTGAAAGGGTTTAATCCTACAAGAGTCCAACCCATTTGG 237
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 178 ACGTTACGTGATGAGTTCACTCTGAAAGGGTTTAATCCAACAAGAGTCAAACCCATTTGG 237
Query 238 AATTTCAAGGGACATTCTGGTTTTGCTTTGGTTGAATTCACTAAAGA-TTTCGAAGGATT 296
||| |||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 238 AATACCAAGGGACATACTGGTTTTGCTTTGGTTGAATTCGCTAAAGACTTTA-AAGGATT 296
Query 297 TGAATGCGCCATGAAATTTGAAAGGAGTTTTGAAACAGACCGTCATGGGAAGAGAGATTG 356
||| |||||||| |||| |||| ||||||||| ||||||||||||||||||||||||
Sbjct 297 CGAAAGCGCCATGCAATTCGAAAAGAGTTTTGATTTAGACCGTCATGGGAAGAGAGATTG 356
Query 357 GGAAAATGGT-ATTCGCTTGAGAGATAATAAGCTTTATGGATGGGTTGCGAGAGAGGATG 415
| |||| ||| || |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 357 GAAAAAAGGTCAT-CGCTTGAGAGATGATAAGCTTTATGGATGGCTTGCGAGAGAGGATG 415
Query 416 ATTATAATCGAAGTGATATTGTTGGGAAGAATGTCAAGAAGAAGAGAGATTTGAAAAGTA 475
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 416 ATTATAATCGAAGTGATACTGTTGGGAAGAATGTCAAGAAGAAGAGGGATTTGAAAAGTA 475
Query 476 T-TGTGCAGATTATGGAAGAAGACGAGAGGAAAATGGT-TCATCTAGTTGAGAATATGTC 533
| | | |||||| | || |||||| |||||||| || | ||||||| ||||||||||||
Sbjct 476 TCTCT-CAGATTGTAGAGGAAGACCAGAGGAAACTG-TATCATCTATTTGAGAATATGTG 533
Query 534 TCAGTCGATTGAGATGAATAAGCAATGTAAACAAGAGCTTGAACAGAAAGTTGATGAGAC 593
||| | ||||||| |||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 534 TCAAACCATTGAGAAGAATAAGCAACGTAAACAACAGCTTGAACAGAAAGTTGATGAGAC 593
Query 594 TTCTCGTTTCCTAGAGAGTTTGGAATTGCATAACGTTCTGTTAAACAAAACCTACCAAGA 653
|| | | |||||||||||||| |||||| || |||||||||| | |||||||||
Sbjct 594 TT-T-G-------GAGAGTTTGGAATTTCATAACCTTATGTTAAACAATAGCTACCAAGA 644
Query 654 AGGGATTGAGAAGATGCAGATGAATATGGAAGAGTTGTATCAACAGGTTCTGGGTGGACA 713
|| |||| |||||||| ||| ||||||| ||||||| |||||||||||||| ||||||||
Sbjct 645 AGAGATTCAGAAGATGGAGAAGAATATGCAAGAGTTTTATCAACAGGTTCTTGGTGGACA 704
Query 714 TGAAAAGTCTTTGGCAGAACTGGAGGCAAAGAGGGAGAAGCTGGACGAGCGTGCAAGACT 773
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 705 TGAAAAGTCTTTTGCAGAACTGGAGGCAAAGAGGGAGAAGCTTGACGAGCGTGCAAGATT 764
Query 774 GATCGAGCAACGGGCAACCATAAACGAAGAAGAGATGGAAAA-ATCCAGACTTGAAAGAG 832
||| ||||||||||| | || ||||||||||||||||||||| | |||| ||||||||||
Sbjct 765 GATTGAGCAACGGGCTATCAAAAACGAAGAAGAGATGGAAAAGA-CCAGGCTTGAAAGAG 823
Query 833 AAATGAATCAAAAGGCTATGTGGGAGCAGAATGAAGCGAATGAGGAAGCTATGAAACTTG 892
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 824 AAATGATTCAAAAGGCTATGTGTGAGCAGAATGAAGCGAATGAGGAAGCTATGAAACTTG 883
Query 893 CAGAAAAGCACCAG 906
||||||||||||||
Sbjct 884 CAGAAAAGCACCAG 897
Score = 414 bits (224), Expect = 1e-114
Identities = 266/286 (93%), Gaps = 4/286 (1%)
Strand=Plus/Plus
Query 946 AAAGAGAAGGAGAAGCTTCATAAAAGAATAATGGAAATGGAAGCGAAGCTAAATGAAACG 1005
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 898 AAAGAGAAGGAGAAGCTTCATAAAAGGATAATGGAAATGGAAGCTAAGCTAAATGAAACG 957
Query 1006 CAAGAGCTGGAGTTGGAGATAGAGAAGCTGAAAGGTACTACCAATGTAATGAAGCATATG 1065
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 958 CAAGAGCTTGAGTTGGAGATAGAGAAGCTGAAAGGTACTACAAATGTGATGAAGCATATG 1017
Query 1066 GTGGGGAGTGATGGAGATGAAGATATTGTGAAGAAGATGGCCAAAACTCAGATAGAGCTT 1125
||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1018 GTGGGTTGTGATGGAGATAAAGATATTGTGGAGAAGATAGCCAAAACTCAGATAGAGCTT 1077
Query 1126 GATGCTCGAGAAACGGCTCTCCATGACAAAATGATGACTCT-GACA-GAAAAAGAACGTA 1183
|| ||||||||||| ||||||||||| |||||||||||||| | || | ||||||||||
Sbjct 1078 GACGCTCGAGAAACAGCTCTCCATGAAAAAATGATGACTCTCG-CACG-AAAAGAACGTG 1135
Query 1184 TGACCAACGATGAGTATCAAGACGCTCGTAAAGAGATGATTCAGGT 1229
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 CGACCAACGATGAGTATCAAGACGCTCGTAAAGAGATGATTAAGGT 1181
Score = 156 bits (84), Expect = 7e-37
Identities = 184/227 (81%), Gaps = 27/227 (12%)
Strand=Plus/Plus
Query 1304 AGGTATGGAATGCAAATGAAGAATTGATGAAGCAAGAGAAGATTAGAGTGAAGAGAATGG 1363
|||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1178 AGGTATGGAAGGCGAATGAAGAGTTGATGAAGCAAGAGAAGATTAGAGTGAAGATAATGG 1237
Query 1364 GGCAATTAAACCCTGAACCCTTCTTGCCTGCAGTGATGAAGAAACATAAAGTTACACAAT 1423
|| | || ||||||| |||||||||||||||||||||||| || || || |
Sbjct 1238 GGGAGTTGAACCCTGCACCCTTCTTGCCTGCAGTGATGAA----CA-AA-----CA---T 1284
Query 1424 CAAGAGCAGAGATTAAGGCTATGCAGCTGTGTTCAGTGTGGGAAGCAAACATAGGAGATG 1483
||| || | | | |||| | ||| | ||||||||| |||| | ||||||||||
Sbjct 1285 -AAG-GCT-A--T---G---ATGCTG-TGT-T-CAGTGTGGGCAGCAGAGATAGGAGATG 1330
Query 1484 TGCAATGGACCCCATTTAGAGTCGATGAGTCTGATGGAACAGCAAAG 1530
|||||||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 1331 TGCAATGGACTCCATTTAGGGTCGATGAGTCTGATGGAACACCAAAG 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5