BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917694

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59510.1 | Symbols: RTFL5, DVL18 | ROTUNDIFOLIA like 5 | chr...   610    3e-174


> AT5G59510.1 | Symbols: RTFL5, DVL18 | ROTUNDIFOLIA like 5 | chr5:23990074-23990696 
FORWARD LENGTH=623
Length=623

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 395/426 (93%), Gaps = 5/426 (1%)
 Strand=Plus/Plus

Query  1    ATGGATGATGAAAAGTTGTGGAAAGTT-TCCAAGAAAGATTCCATCTTCGAAACGACTCA  59
            |||||||||||||| |||||||||||| |  |||||||||||||||||||||||||||||
Sbjct  16   ATGGATGATGAAAATTTGTGGAAAGTTGT-GAAGAAAGATTCCATCTTCGAAACGACTCA  74

Query  60   TTTCTCTTCAAAACCTGTTTTCACACGAAGTTTCTCAAC-TAAAC--CCACTTCTTCTTC  116
            ||||||||||||||||||||| |||||||| ||||||||  ||||  |  ||||||||||
Sbjct  75   TTTCTCTTCAAAACCTGTTTTTACACGAAGCTTCTCAACAAAAACTTCTTCTTCTTCTTC  134

Query  117  AAAACCCGTTTTCATACGAAGTTTCTCAACTAAACCCACTTCGTATTCTTCATCAGAGCC  176
            |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct  135  AAAACCCGTTTTCACAAGAAGTTTCTCAACTAAACCCACTTCGTATTCTTCATCAGAGCC  194

Query  177  CATCTTTAGACGAAGTTTCTCTGCAAAGCCTGCTCCTTCGAAATCTTTGTTTCTGTCTAG  236
            |||||||||||| |||||||||||||| ||  || |||||||||||  |||||| |||||
Sbjct  195  CATCTTTAGACGGAGTTTCTCTGCAAAACCCACTTCTTCGAAATCTCCGTTTCTATCTAG  254

Query  237  AAGCAGTTCCACGAAATGCCAAGCTGATACATCTTCTGCTTCCAAGTGTTCCATCTCTCG  296
            |||| |||||||||||||||  | ||||||||||||| ||||||||||||||||||||||
Sbjct  255  AAGCGGTTCCACGAAATGCCCTGTTGATACATCTTCTACTTCCAAGTGTTCCATCTCTCG  314

Query  297  GAGCTTGTCACAGAAAGGAGCTTCGGTGACCCGAAAGTGTCGTAATATGGCCAAGGAGCA  356
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  315  GAGCTTGTCTCAGAAAGGAGCTTCGGTGACCCGAAAGTGTCGTAATATGGCCAAGGAACA  374

Query  357  CAAGTCTCGGTTTTACATCATGAAACGCTGCGTTTTGATGCTCGTTTGTTGGCACAAACA  416
            ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct  375  CAAGTCTCGGTTTTACATCATGAAACGTTGCGTTCTGATGCTCGTTTGTTGGCACAAACA  434

Query  417  TGCCTG  422
            ||||||
Sbjct  435  TGCCTG  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5