BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917732
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 300 5e-81
> AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=474
Length=474
Score = 300 bits (162), Expect = 5e-81
Identities = 224/251 (89%), Gaps = 16/251 (6%)
Strand=Plus/Plus
Query 38 GACTCTCTGCTTACACCACAGATCAATCACTGAGGCAACTGTTTGCGCCTTTTGGTCAGA 97
||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 230 GACTCTCTGCTTACACCACAGATCAATCACTGAGGCAACTGTTTGCGCC------T---- 279
Query 98 TTATAGAAGCTCGTCTTATTAGGGACCAGCAAACACAAAGACCTAAAGGTTTCGGATTCA 157
|| | ||||||||||||| |||||||||||| || ||||||||||||||||||||||
Sbjct 280 TT-T----GCTCGTCTTATTAAGGACCAGCAAACGCAGAGACCTAAAGGTTTCGGATTCA 334
Query 158 TTACTTTCGAGTCTGAGGATGATGCACAAAACGCTTTGAAAGCTTTGAATGGGAAGATTG 217
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 335 TAACTTTTGAGTCTGAGGATGATGCACAAAAGGCTTTGAAAGCTTTGAATGGGAAGATTG 394
Query 218 TTAATGGCAGATTAATATTTGTGGAAGCTGCAAAGGAAGTAGAAGCACCAATAACAATTA 277
||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 395 TTAATGGCAGACTAATATTTGTGGAAACTGCAAAGGAAGTAGAAGCACCAACAACAAGTC 454
Query 278 TGAAAAAGTAA 288
|||||| ||||
Sbjct 455 TGAAAA-GTAA 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13270685736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5