BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917759

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60100.2 | Symbols: PRR3 | pseudo-response regulator 3 | chr...   279    1e-74


> AT5G60100.2 | Symbols: PRR3 | pseudo-response regulator 3 | chr5:24197998-24201364 
REVERSE LENGTH=2182
Length=2182

 Score =  279 bits (151),  Expect = 1e-74
 Identities = 171/181 (94%), Gaps = 0/181 (0%)
 Strand=Plus/Plus

Query  112  GACTCAACTCGCCATATTGTCACTGCCCTTTTGAAGAATTGCAGCTATGAAGTTACTGCT  171
            |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  613  GACTCAACACGCCATATTGTTACTGCCCTTTTAAAGAATTGCAGCTATGAAGTTACTGCT  672

Query  172  GTTCCGGATGTTCTTGAAGCCTGGAGAATTCTAGAAGATGAGAAGAGTTGCATTGATCTT  231
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  673  GTTCCGGATGTCCTTGAAGCCTGGAGAATTCTAGAAGATGAGAAAAGTTGCATTGATCTT  732

Query  232  GTATTAACAGAGGTTGTCATGCCTGTGCATTCTGGAACTGGTCTGTTGTCCAAGATTATG  291
            || ||||||||||||| ||||||||||||||| ||||| |||||| ||||||||||||||
Sbjct  733  GTCTTAACAGAGGTTGACATGCCTGTGCATTCAGGAACCGGTCTGCTGTCCAAGATTATG  792

Query  292  A  292
            |
Sbjct  793  A  793



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5