BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917773
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60230.2 | Symbols: SEN2, ATSEN2 | splicing endonuclease 2 |... 1136 0.0
> AT5G60230.2 | Symbols: SEN2, ATSEN2 | splicing endonuclease 2
| chr5:24250091-24251595 REVERSE LENGTH=1505
Length=1505
Score = 1136 bits (615), Expect = 0.0
Identities = 704/748 (94%), Gaps = 1/748 (0%)
Strand=Plus/Plus
Query 1 ATGCAGTTTAATTTCATGGCTCCGAGATGGAAATGGAAAGGTGCTGAAGCAAAAGCTCTT 60
|||||| | |||| |||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 644 ATGCAGCTCAATTCCATGGCGCCTAGATGGAAATGGAAAGGAGCTGAAGCAAAAGCTCTT 703
Query 61 GCAGAACCTATTTCTAAATCAGTCTCAGAGCTCCAGCTCTCTCTGGCTGAAACAGAGTCC 120
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 704 GCAGAACCTATTTCAAAATCAGTCTCAGAGCTCCAGCTCTCTCTAGCCGAAACAGAGTCC 763
Query 121 TCCGGTACCTTATCGAGTTCCAATGTGCTTCTAGCGGTTGAGCCAGAACAAGCTGTGCTT 180
|| || ||| | || |||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 764 TCGGGAACCCTCTCAAGTTGCAATGTGCTTCTAGCGGTTGAGCCAGAGCAAGCTGAGCTT 823
Query 181 CTTGACCGTTGTTGTTTTGGCAGACTCGTTCTATCCGCTGAGAAAGTCAAGAAATGGATT 240
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 824 CTTGACCGTTGTTGTTTTGGCAGACTCGTTCTATCGGCAGAGAAAATCAAGAAATGGATT 883
Query 241 CAGTTATCTTTTGAAGAAGCTTTCTTTTTGCACTACAATCTCAAATGCATCAAAATATCT 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 884 CAGTTATCTTTTGAAGAAGCTTTCTTTTTGCATTACAATCTCAAATGCATCAAAATCTCA 943
Query 301 CTTCAAGGTCGTTGCTTGGAGAATGAAGTAGATACATGGCTCTACATGAAATCAAAAAGA 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 944 CTTCAAGGTCGTTGCTTGGAGAATGAAGTAGACACATGGCTCTACATGAAATCAAAAAGA 1003
Query 361 CCAAACTTCCCAATGTTTTTCAAAGCTTATTCACATTTACGATCGAAGAATTGGGTGTTG 420
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1004 CCAAACTTTCCAATGTTTTTCAAAGCTTATTCACATTTACGATCGAAGAACTGGGTTTTG 1063
Query 421 AGATCCGGGTTGCAATACGGTGTGGATTTCGTCGCATACCGTCACCATCCATCTCTTGTC 480
||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1064 AGATCAGGGTTGCAATACGGTGTGGATTTTGTGGCATACCGTCACCATCCATCTCTTGTC 1123
Query 481 CACTCTGAATACTCAGTTTTGGTTCAGTCTGGTGACAGTGATCGGTTAAGAGTGTGGTCA 540
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CACTCTGAATACTCGGTTTTAGTTCAGTCTGGTGACAGTGATCGGTTAAGAGTGTGGTCA 1183
Query 541 GATATCCATTGTGCTGTTCGGTTAAGTGGAAGCGTTGCGAAAACGTTGTTGACTCTCTAT 600
|||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1184 GATATCCATTGTGCTGTTAGGTTAAGCGGAAGTGTTGCGAAAACGTTGTTGACTCTCTAC 1243
Query 601 GTCAATGGTAACTTCAAAGGAGAGGATTTGAATCTACCTGTATGTTTGGAGAACTTCACA 660
|| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1244 GTTAATGGTAACTTCAAAGGAGAGGATGTGAATCTACTTGTATGTTTGGAGAACTTCACA 1303
Query 661 GTGGAAGAACAGACGATAAGTAGATGGAGCCCAGAACTCAGTCGTGAAGAT-AATCCACA 719
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1304 GTGGAAGAACAAACGATAAGTAGATGGAGCCCAGAACTCAGTCGTGAAGATCAATCCACA 1363
Query 720 AATTCAAAACAAAATGTTACCAATGTGA 747
|||||||||||| ||||| |||| ||||
Sbjct 1364 AATTCAAAACAACATGTTCCCAACGTGA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5