BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917774
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60250.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 1587 0.0
> AT5G60250.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:24252158-24254849 FORWARD LENGTH=2175
Length=2175
Score = 1587 bits (859), Expect = 0.0
Identities = 997/1064 (94%), Gaps = 7/1064 (1%)
Strand=Plus/Plus
Query 379 GCATCATGCAACACTTTTCATCTTGTCAGCATGTTCTGGTGGCTGGAAACGATGTTAAAT 438
|||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||
Sbjct 820 GCATCATGCAACACTTTTCATCTTATCAGCATGTTCTGGTGGCTAGAAATGATGTTAAAT 879
Query 439 TTGCTTATAAACTTCCAAGGGAATCAATACTTTCTACGGTCACCCCTCATGAAGATCCTC 498
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 880 TTGCTTATAAACTTGCAAGGGAATCAATACTTTCTATGGTCACCCCTCATGAAGATCCTC 939
Query 499 GCCAAGCAAAATCAGCTCGGAAAGAGGAGTGTGCTATCTGTTTCAACGATATCCCTTGCT 558
||||||||||| | | || |||||||||||||||||||||||||||||| || | |||||
Sbjct 940 GCCAAGCAAAAGCTGTTCTGAAAGAGGAGTGTGCTATCTGTTTCAACGACAT-CGTTGCT 998
Query 559 GAGCGCATGTTTTCTGTTGGA-AAATGCCGTCACCGCTTTTGCTTTCAATGTGTGAAACA 617
||| | |||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 999 GAGGGTATGTTTTCTGTT-GACAAATGCCGTCACCGTTTTTGCTTTCAATGTGTGAAACA 1057
Query 618 ACATGTTGAGGTGAAGCTGCTTCATGGAATGGTTCCGAAATGTCCTCACGATGGCTGCAA 677
||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1058 GCATGTAGAGGTGAAGCTGCTTCATGGAATGGCTCCAAAATGTCCTCACGATGGCTGCAA 1117
Query 678 GTCTGAGCTGGTTATCGATGCCTGTGGCAAGCTTTTGACTCCAAAACTGAGTAAAATGTG 737
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 1118 GTCTGAGCTGGTTATCGATGCATGTGGCAAGCTTTTGACTCCAAAGCTGAGTAAATTGTG 1177
Query 738 GCAACAAAGACTTAAAGAGAATGCGATACCTGTCACAGAGAGAGTTTACTGCCCTTACCC 797
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1178 GCAACAAAGACTTCAAGAGAATGCAATACCTGTCACAGAGAGAGTTTACTGCCCTTACCC 1237
Query 798 GAGGTGCTCGGCTTTGATGTCCAAGACCAAGATTTCTGAATCTGCCAAGAGCTTACTGTC 857
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1238 GAGGTGCTCGGCTTTGATGTCCAAAACCAAGATTTCTGAATCTGCCAAGAGCTTACTGTC 1297
Query 858 TGTTTACCCTAAATCTGGAGTTAGGAGATGTGTTGAATGTCGTGGCCTCTTCTGTGTGGA 917
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 TCTTTACCCTAAATCTGGAGTTAGGAGATGTGTTGAATGTCGTGGCCTCTTCTGTGTGGA 1357
Query 918 CTGTAAAGTTCCGTGGCATGCAAATCTGTCCTGCACTGAGTATAAGAAATTGCATCCTAA 977
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1358 CTGTAAAGTTCCGTGGCATGGAAATCTGTCCTGCACTGAGTATAAGAAATTGCATCCTGA 1417
Query 978 CCCTCCAGCAGATGACGTGAAGCTAAAATCTCTTGCGAACAATAAGATGTGGCGCCAATG 1037
||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| ||
Sbjct 1418 GCCTCCGGCAGATGATGTGAAGCTCAAATCTCTTGCAAATAATAAGATGTGGCGCCAGTG 1477
Query 1038 TGGCAAGTGCCAACACATGATTGAACTTTCACAAGGATGCAATCACATAACTTGCAGATG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TGGCAAGTGCCAACACATGATTGAACTTTCACAAGGATGCAATCACATAACTTGCAGATG 1537
Query 1098 TGGGCATGAGTTTTGCTACAATTGCGGAGGTGGATGGAACAAGAAAATGAGGACTTGTGT 1157
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1538 CGGGCATGAGTTTTGCTACAATTGCGGAGGTGGATGGAACAAGATAATGGGGACTTGTTT 1597
Query 1158 AAATCGCTGCCCGGCCTGGAACGAAGAATACATCACACGTGAAGATCCAGTGCGTGCCAA 1217
|||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1598 AAATCGCTGCCCAACCTGGAACGAAGAATACATCACACGACAAGATCCAGCGCGTGCCAA 1657
Query 1218 TGTGGC-GCCTAACAACTACTTtgatgatgaggatgaggac-agtgatgatgatgatTAC 1275
|||||| || ||||||||||||||||||||||||||| || | || ||||| |||||||
Sbjct 1658 TGTGGCAGC-TAACAACTACTTTGATGATGAGGATGATGATGA-TGTTGATGGTGATTAC 1715
Query 1276 GACTATGAAGACTTCTTCCACCCTCATTTTGGACATGCTATGAATGCTCATAATCCTGAA 1335
|||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 1716 GACTATGATGACTTCTTCCACCCGCATTTTGGACATGCTATGAATGATCGTAATCCTGAA 1775
Query 1336 GAGCCCTTCGACCCCTTCTTCGACTTGCCAGATGGTGTGATCTTTACCCCCGAGATGTTG 1395
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1776 GAGCCCTTCGACCCCTTCTTCGACTTGCCAGATGGTGTGCTCTTTACCCCCCAGATGTTG 1835
Query 1396 TCTCCCAAGAGTCGTCTCCAATTGTACATGGCGGAAGCAGATGA 1439
||| |||||||||||| ||||||||| || |||| |||||||
Sbjct 1836 TCTTCCAAGAGTCGTCAGCAATTGTACTTGCCGGATTCAGATGA 1879
Score = 508 bits (275), Expect = 5e-143
Identities = 349/384 (91%), Gaps = 7/384 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTCCGATTCCGAATATGCTTTTCGGTTACAGATGGAGGAGGCACTCGCGGCTTCT 60
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATGGATTTCGATTCCGAGTATGCTTTTCGGTTACAGATGGAGGAGGCACTCGCGGCTTCT 128
Query 61 CTATCTTCTCAATCTCGCACTCCTCAACGACCACCTTCTCCTCCGATTGTGGCTTGGTGT 120
||||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||||
Sbjct 129 CTATCTTCTCAATCTCGCACTCCGCAACGACCACCGTCACCTCCGATTGTGGCTACGTGT 188
Query 121 GGTATCGCT-ATCGTTGAAAACGATCGGAACGGTTCGACGACGGCTaaaaaaaGTAGCGG 179
||| || || |||||||||||| ||| |||| ||||| |||||| |||| |||||||||
Sbjct 189 GGTGTC-CTTATCGTTGAAAACAATCCAAACGATTCGAAGACGGCGAAAACAAGTAGCGG 247
Query 180 TTACGGTTTCGATTTTAGGAGAGCCATCGGCGGAGGAAACTCTAAAGGCAAA-GGCAAAA 238
||||||||||||||||| ||||||| ||||||| ||||||||||||| |||| |||||||
Sbjct 248 TTACGGTTTCGATTTTAAGAGAGCCGTCGGCGGTGGAAACTCTAAAG-CAAAAGGCAAAA 306
Query 239 CCAACGAGTCTGTCACTGGTGTACGTACAGATGAACCAAACCCTAACATTGGGCTTGGTA 298
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 307 CCCACGAGTCTGTCACTGGTGTACGTACAGATGAACGAAACCCTAACATTGGGCTCGGTA 366
Query 299 ACTCCCGGAGTAC-T-T-CCGGACACGATAATATGAAACCCTTGCCGCAGGTAACTGTTC 355
||||||||||||| | | ||||||| | |||| |||||||||||| |||| ||||||||
Sbjct 367 ACTCCCGGAGTACGTCTACCGGACATGGCAATACGAAACCCTTGCCTCAGGAAACTGTTC 426
Query 356 GTCCGGCGCAATTAGTCGGTGAGG 379
||||||||||||||||||||||||
Sbjct 427 GTCCGGCGCAATTAGTCGGTGAGG 450
Score = 167 bits (90), Expect = 3e-40
Identities = 110/120 (92%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 1432 GCAGATGAGGATTGCGAATACTTTGGGAAGTATGGAAAGTACACTACAGTGTACGACTCC 1491
||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1917 GCAGATGAGAATTGCCCATACTTTGGGAAGTATGGAAAGTACACTATAATGTACGACTCC 1976
Query 1492 GACGGCTATGAAATCGAGGACTACACGAACCCTTTCCATCCTGATTACCCTCACTTCTGA 1551
|||||||||||| ||||||| | ||||||||||||||||||||| || ||||||||||||
Sbjct 1977 GACGGCTATGAACTCGAGGATTTCACGAACCCTTTCCATCCTGACTATCCTCACTTCTGA 2036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5