BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917793

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60460.1 | Symbols:  | Preprotein translocase Sec, Sec61-bet...   505    1e-142


> AT5G60460.1 | Symbols:  | Preprotein translocase Sec, Sec61-beta 
subunit protein | chr5:24317437-24317935 REVERSE LENGTH=499
Length=499

 Score =  505 bits (273),  Expect = 1e-142
 Identities = 305/321 (95%), Gaps = 0/321 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGAGAGGCTCTTCCCAATCCCAACAATCAACCTCCACCGCCTCCTCAACCGCCCGG  60
            |||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||
Sbjct  17   ATGGCGAGAGGCTCTTCCCAATCCCAACAATCAACCTCCACCGGTTCTTCAACCGCCCGG  76

Query  61   CCCGGTCTGGCCGCTCCTCGTGGATCCGCCGCCGCTACTGCCGGCATGCGTCGCCGCAGG  120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  77   CCCGGTCTGGCCGCTCCTCGTGGTTCCGCCGCCGCTACTGCCGGCATGCGTCGCCGCAGG  136

Query  121  CTCGGTGGCGGTGGTAGCGTATCCTCAGGCGGCGGATCCGCAGCTGGATCAGGATCGGGC  180
            ||||||||||||||| |||||||||||||||||||||| | || ||||||||||||| ||
Sbjct  137  CTCGGTGGCGGTGGTGGCGTATCCTCAGGCGGCGGATCTGGAGTTGGATCAGGATCGAGC  196

Query  181  AACATGCTGAGATTCTACACAGATGAAACTCCAGGGTTGAAGATCTCACCGACAGTCGTT  240
            ||||||||||||||||||||||||||  |||| |||||||||||||||||||| || |||
Sbjct  197  AACATGCTGAGATTCTACACAGATGATGCTCCGGGGTTGAAGATCTCACCGACGGTTGTT  256

Query  241  CTGATCATGAGCCTCTGTTTCATCGGCTTCGTCACCGCTCTTCACGTCTTTGGAAAACTC  300
            ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  257  CTGATCATGAGTCTCTGTTTCATCGGCTTCGTCACTGCTCTTCACGTCTTTGGAAAACTC  316

Query  301  TACCTCCACAAATCCGGATCC  321
            |||||||||||||||||||||
Sbjct  317  TACCTCCACAAATCCGGATCC  337



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5