BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg917793 Length=330 Score E Sequences producing significant alignments: (Bits) Value AT5G60460.1 | Symbols: | Preprotein translocase Sec, Sec61-bet... 505 1e-142 > AT5G60460.1 | Symbols: | Preprotein translocase Sec, Sec61-beta subunit protein | chr5:24317437-24317935 REVERSE LENGTH=499 Length=499 Score = 505 bits (273), Expect = 1e-142 Identities = 305/321 (95%), Gaps = 0/321 (0%) Strand=Plus/Plus Query 1 ATGGCGAGAGGCTCTTCCCAATCCCAACAATCAACCTCCACCGCCTCCTCAACCGCCCGG 60 ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 17 ATGGCGAGAGGCTCTTCCCAATCCCAACAATCAACCTCCACCGGTTCTTCAACCGCCCGG 76 Query 61 CCCGGTCTGGCCGCTCCTCGTGGATCCGCCGCCGCTACTGCCGGCATGCGTCGCCGCAGG 120 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 77 CCCGGTCTGGCCGCTCCTCGTGGTTCCGCCGCCGCTACTGCCGGCATGCGTCGCCGCAGG 136 Query 121 CTCGGTGGCGGTGGTAGCGTATCCTCAGGCGGCGGATCCGCAGCTGGATCAGGATCGGGC 180 ||||||||||||||| |||||||||||||||||||||| | || ||||||||||||| || Sbjct 137 CTCGGTGGCGGTGGTGGCGTATCCTCAGGCGGCGGATCTGGAGTTGGATCAGGATCGAGC 196 Query 181 AACATGCTGAGATTCTACACAGATGAAACTCCAGGGTTGAAGATCTCACCGACAGTCGTT 240 |||||||||||||||||||||||||| |||| |||||||||||||||||||| || ||| Sbjct 197 AACATGCTGAGATTCTACACAGATGATGCTCCGGGGTTGAAGATCTCACCGACGGTTGTT 256 Query 241 CTGATCATGAGCCTCTGTTTCATCGGCTTCGTCACCGCTCTTCACGTCTTTGGAAAACTC 300 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 257 CTGATCATGAGTCTCTGTTTCATCGGCTTCGTCACTGCTCTTCACGTCTTTGGAAAACTC 316 Query 301 TACCTCCACAAATCCGGATCC 321 ||||||||||||||||||||| Sbjct 317 TACCTCCACAAATCCGGATCC 337 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15381931194 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5