BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917794
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60470.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 1812 0.0
> AT5G60470.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:24320595-24322790 FORWARD LENGTH=1372
Length=1372
Score = 1812 bits (981), Expect = 0.0
Identities = 1255/1381 (91%), Gaps = 44/1381 (3%)
Strand=Plus/Plus
Query 1 ATGATGATTCCACATAATCATGACCGCCTCTCATTCTCTAGCTTTGTCCATGACCAAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGATGATTCCACATAATCATGACCGCCTCTCATTCTCTAGCTTTGTCCATGACC---AA 57
Query 61 GAGAACATCA-CCATAAATCC-TAGCCCTAAGTCTCAGCCTCCAGCCTCCACTAACACAC 118
||| |||||| || | ||||| || |||||| ||||||||| ||||||||||||| ||||
Sbjct 58 GAGCACATCACCCCT-AATCCTTA-CCCTAACTCTCAGCCTGCAGCCTCCACTAAAACAC 115
Query 119 CCAAGAAAAAGAGAAACCTCCCAGGAAATCCAGGCATGTATCCAAATGCAGAAGTCATCG 178
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 116 CCAAGAAAAAGAGAAACCTTCCAGGAAATCCAGGCA--TATCCAAATGCAGAAGTCATCT 173
Query 179 CTCTATCGCCAAACTCCCTCATGGCGACAAATCGGTTCTTCTGCGAAATCTGCAACAAGG 238
||||||| ||||| |||||||||||||||||||||||||| || ||||| || |||||||
Sbjct 174 CTCTATCTCCAAAATCCCTCATGGCGACAAATCGGTTCTTTTGTGAAATTTGTAACAAGG 233
Query 239 GGTTTCAGAGAGAACAGAACCTTCAGCTTCACAAACGAGGCCACAACCTGCCATGGAAGC 298
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 234 GGTTTCAGAGAGAACAGAACCTTCAGCTCCACAAAAGAGGCCACAACCTGCCATGGAAGC 293
Query 299 TTAAGCAGAAAACAAACAAGAATCAGGTGAAGAAGAAAGTTTATATTTGCCCCGAGAAGA 358
| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 294 TGAAGCAGAAAACGAACAAGAATCAGGTGAAGAAGAAAGTTTATATATGCCCTGAGAAGA 353
Query 359 GTTGTGTCCATCATGATCCAGCTCGAGCCCTAGGCGACCTCACTGGAATCAAGAAGCACT 418
|||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 354 GTTGCGTCCATCATGATCCAGCTCGAGCCCTAGGAGACCTTACTGGAATAAAGAAGCACT 413
Query 419 TTAGCAGGAAACATGGAGAGAAGAAGTGGAAATGCGACAAGTGTTCCAAAAAGTATGCTG 478
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 414 TTAGCAGGAAACATGGAGAGAAGAAGTGGAAATGCGATAAGTGTTCCAAGAAGTATGCTG 473
Query 479 TGATATCCGATTGGAAAGCTCATAACAAGATCTGTGGTAGCAGAGAGTTTAGATGTGATT 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 474 TGATATCCGATTGGAAAGCTCATAACAAGATTTGTGGTAGCAGAGAGTTTAGATGTGATT 533
Query 539 GTGGTACCCTCTTCTCCAGGAAGGAAAGTTTCATCTCACATAGATCCTTCTGTGATGTCT 598
||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 534 GTGGTACTCTTTTCTCCAGGAAGGACAGTTTCATCTCACATAGATCCTTCTGTGATGTCT 593
Query 599 TAGCTGAAGAAAGTTCTAAATTCTTCTCAGTTCCATCACCTTTAGCCGCCAATTCGACTA 658
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 594 TAGCTGAAGAAAGTTCTAAATTCTTCTCAGTTCCTTCACCATTAGCCGCCAATTCGACCA 653
Query 659 TCGCCACTGT-AGCTGATATCAACAATCCAATTCTTATTCAATCACAATTGGATCAATCT 717
|||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 654 TCGCCACTGTCA-CTGATACCAACAATCCAATTCTCATTCAATCACAATTGGATCAATCT 712
Query 718 TCCA----TA-GG----T---AACGTCAACAACAATCACACCAGC-T-T----A-AA--G 756
|||| || || | |||||||||||||||||||||| | | | | || |
Sbjct 713 TCCACAGGTACGGCCGATCTTAACGTCAACAACAATCACACCACCCTATTTGGACAAAAG 772
Query 757 TTCACAAACTCCAACCCAATCCAACAACAAGCCAATGCTTTTGCGCTGTCCTCAGCACCA 816
||||| ||||||||||||| |||||||||| |||||||||| ||| |||||||| |||||
Sbjct 773 TTCACCAACTCCAACCCAACCCAACAACAACCCAATGCTTTGGCGTTGTCCTCACCACCA 832
Query 817 TCACCT-GTTACTACATCTGATTCGGTTCATAATCTATGGAAGTTACAAGAAGAGGAATG 875
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCACCTCGT-AGTACATCTGATTCGGTTCATAATCTATGGAAGTTACAAGAAGAGGAATG 891
Query 876 TTCACACCAGTGGTTACTCAATGAATATATGAACAACGACAAAAACATTATTC-AGAAGG 934
| |||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||
Sbjct 892 TGCACACCAGTGGTTACTCAATGAATATATGAACAATAACAAAAACAT-ATTCCATAAGG 950
Query 935 GAATATTCAAGAATCAAGAAGATGAGATCAAGAAGGGAAATATCTACAGCGGCTCGAACC 994
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 951 GAATATTCAAGAATCAAGAAGATGAGATAAAGAAGGGAAATATCTACAGCGGCTCAAACC 1010
Query 995 CAACCGATGCAAATACAGCATCCTGGCTCTCGTATAGTCAAGAAGCAGGGAATATGGCTT 1054
||||||||| ||| | |||||||| | ||||||||| ||||||||||| |||||||||||
Sbjct 1011 CAACCGATGGAAACATAGCATCCTTGTTCTCGTATAATCAAGAAGCAGTGAATATGGCTT 1070
Query 1055 CATTGTCGGCGACAACATTGCTTCATAAGGTGGCTCAAATGGGATCATCATCAAGCTCCG 1114
|||| ||||| |||||||||||||| ||||| ||||||| |||| || ||||||||||||
Sbjct 1071 CATTTTCGGCAACAACATTGCTTCAAAAGGTAGCTCAAACGGGAACACCATCAAGCTCCG 1130
Query 1115 ACACTAGCACCA---TGTTTGGGCTCATGACTTCCTCCATCTTCAACAATAC-ATTGCCA 1170
| |||||||||| ||||||||| |||||||||||||||||||||||||| || || |
Sbjct 1131 AAACTAGCACCACCATGTTTGGGCAAATGACTTCCTCCATCTTCAACAATACGAT-GCTA 1189
Query 1171 AAATCCAATTGTTTCAA-GGCGAACAATAAGGAAGAAGAGTTGACCAGAGACTTTCTTGG 1229
|| ||| ||||||| || |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1190 AACTCCTATTGTTT-AACGGCGAAGAATAATGAAGAAGAGTTGACCAGAGACTTTCTTGG 1248
Query 1230 TGTGGGAAGTCCTGACGACCAACAACAACTACATCATCATCACTTCCCATCAAGCGTGCC 1289
|||||||||| ||| |||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 1249 TGTGGGAAGTAGTGAGGACCAACAACGTCTACATCGTCATCGCTTCCCATCAAGCGTGCC 1308
Query 1290 ATTGACGGTGAACCATAATGCTCCCAAGTTGGCTGCAACCATTGTAGGCAAGGAAGCAAC 1349
|||||||| ||||||| || |||||||||||| |||||||||||||||| |||||||||
Sbjct 1309 ATTGACGGCGAACCATGATATTCCCAAGTTGGCCGCAACCATTGTAGGCA-GGAAGCAAC 1367
Query 1350 C 1350
|
Sbjct 1368 C 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5