BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917815
Length=2799
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60700.1 | Symbols: | glycosyltransferase family protein 2 ... 3591 0.0
> AT5G60700.1 | Symbols: | glycosyltransferase family protein
2 | chr5:24402129-24404948 REVERSE LENGTH=2426
Length=2426
Score = 3591 bits (1944), Expect = 0.0
Identities = 2134/2228 (96%), Gaps = 4/2228 (0%)
Strand=Plus/Plus
Query 574 GCTCAGCTTGATTCTCTTCTCCACCAAACGCTGCCGTTTCACCATGTCTGGGTTTTGGCC 633
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 GCTCAGCTTGATTCTCTTCTCCACCAGACGCTACCGTTTCACCATGTCTGGGTTTTGGCC 60
Query 634 TTCGGAAGTCCTAACGAAGCTTCTCTCCGGCGAATCGCCGGAAGTTACAACGATTCTCGA 693
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCGGGAGTCCTAACGAAGCTTCTCTCCGGCGAATCGCCGGAAGTTACAACGATTCTCGA 120
Query 694 ATCAGCTTCATCAGCTCAAACTACGACTTCAAATACTATGGAAGATTCCAGATCGCGCTT 753
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 ATCAGCTTCATCAGCTCAAACTACGATTTCAAATACTATGGAAGATTCCAGATCGCGCTT 180
Query 754 CAAACAGAAGCAGATCTGGTTTACATCCTCGACGATGATATGATTCCTGGGAAGAAAATG 813
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAACAGAAGCAGATCTGGTTTATATCCTCGACGATGATATGATTCCTGGGAAGAAAATG 240
Query 814 CTTCAGATGCTCTCACACGTCGCCGGAACTGAGAAGTACGAGAACTCAGTTTTGGGAAGT 873
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 241 CTTCAGATGCTCTCACACGTCGCCGGAACTGAGAAATACGAAAACTCTGTTTTGGGAAGT 300
Query 874 ATCGGACGGATTTTACCTTTCCGGCAAAAGGATTTCACGTTTCCAAGCTATAGGAAGTTT 933
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 ATCGGAAGGATTTTACCTTTCCGGCAAAAGGATTTCACGTTTCCGAGCTATAGGAAGTTT 360
Query 934 AGATCAAAGGAAGCTGGGCTTTATTTGCCTGATCCGGCTTATGACATCACTTTAGATCGG 993
||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 361 AGATCTAAGGAAGCTGGCCTTTACTTGCCTGATCCAGCTTATGACATCACCTTAGATCGG 420
Query 994 ATTCTTCAGGTTGATTTCTTATCAAGCTCGTGGTTCTTATCGGCGGAGCTCGTGAAAGCT 1053
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTCTTCAGGTTGATTTCTTATCAAGCTCGTGGTTCTTATCGGCGGAGCTCGTGAAAGCG 480
Query 1054 TTATTCATCGAAAAACCATTCACATTCTCTACCGGCGAAGATCTTCACCTGAGTTATCAG 1113
|| |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 481 TTGTTCATCGAAAAACCATTCACATTCTCTACCGGTGAAGATCTTCATCTCAGTTATCAG 540
Query 1114 CTTCAGAAATACAGAAATGCAGGTTCTTTTGTTCTTCCTGTTGATCCAAATGATAAGGAG 1173
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 541 CTTCAGAAATACAGAAATGCAGGTTCGTTTGTTCTTCCCGTTGATCCAAATGATAAGGAG 600
Query 1174 ACATGGGGAGATAGTGAACACAGGCTAGCTTATGTGTCTGAGACTACTGTGAT-TTTCAA 1232
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 601 ACTTGGGGAGATAGTGAACACAGGTTAGCTTATGTGTCTGAGACTACTGTGATATTT-AA 659
Query 1233 AAACATTGTTGAAGTAAGAGATAATCAATGGTGGAAAGCGCTTTCTACGGGTTATGTAAC 1292
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 660 AAACATTGTTGAAGTAAGAGATAACCAGTGGTGGAAAGCGCTTTCTACGGGTTATGTGAC 719
Query 1293 TCAGTGGGCTGCAATGTATCCTCAGAAGATCGATGCTTTGTTTTACGCGCATTCCATTGA 1352
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 720 TCAATGGGCTGCAATGTATCCTCAGAAGATTGATGCTTTGTTTTACGCGCATTCGATTGA 779
Query 1353 TGAAGTTATAGCACTTGGTCCTTTGCTTGAGAAGTTCAGAGGTACTGTGGGTAAAAAGGC 1412
|||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 780 TGAAGTTAAAGCACTTGGTCCTTTGCTGGAGAAGTTTAGAGGTACTGTTGGTAAAAAGGC 839
Query 1413 TTATATCGCGGTTTCGGGTGGGAAGTTCTGTCCTTGTGAGGATGCGGCCTCGGCCTTGAA 1472
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 840 TTATATCGCGGTTTCGGGTGGGAAGTTCTGTCCGTGTGAGGATGCGGCGTCGGCTTTGAG 899
Query 1473 ATGGCCTAAGGTTGTTTGTAAGGAGAGGAGATTCAAGATTTTTGATTTGGAAGTTGGAGC 1532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 GTGGCCTAAGGTTGTTTGTAAGGAGAGGAGATTCAAGATTTTTGATTTGGAAGTTGGGGC 959
Query 1533 TATCTTGGGTGTCTCGAACTCAGAGGTGCCTGTATTTCAAGCTGTGTATTCGAGCATGAA 1592
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TATTTTGGGTGTGTCGAACTCAGAGGTGCCTGTATTTCAAGCTGTGTATTCGAGCATGAA 1019
Query 1593 AGGGCTTATTAAGATTCATAATCCAAGTGTGGTGATAACGGTTGCTGATGCTGATCCTAA 1652
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 1020 AGGGCTTATTAAGATTCATAATCCAAGCGTGGTGATTACGGTAGCTGATGCTGATCCGAA 1079
Query 1653 TGTCAAGAAAGCTTTGAAAATGGCTACCGAGACAAATTCTAATGGCACTGCACTGGTTCT 1712
||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 1080 TGTCAAGAAAGCTTTGAAAATGGCTACCGAGACTAATTCTAATGGCACCGCATTGGTTCT 1139
Query 1713 TCTCCCGAGAGCTTCTATCTCCAAGGTTCTATGGATGGCTGATCTAAGATCAACAGCATT 1772
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 TCTACCGAGAGCTTCTATCTCCAAGGTTCTCTGGATGGCTGATCTAAGATCAACAGCATT 1199
Query 1773 GCCAAACTGGAATAAGATGAGAGTATCAGTGAACATCATCACCCAAAACCGAGCTCAATC 1832
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1200 GCCAAACTGGAATAAGATGAGAGTCTCAGTGAACATCATCACCCAAAACCGAGCTCAATC 1259
Query 1833 TTTATTAAGATTGCTTAGGTCTTTGAGCAATGCATACTACCTTGGCGACGAAATATCACT 1892
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 TTTATTAAGATTGCTTAGGTCTTTGAGCAATGCATACTACCTTGGTGACGAAATATCACT 1319
Query 1893 CAGCTTCAACATGGATAGCAAAGTGGATGAAGAGACGATCAATGTAGTGAGCACATTTGA 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1320 CAGCTTCAACATGGATAGCAAAGTGGATGAAGAGACGATCAATGTAGTGAGCACATTCGA 1379
Query 1953 TTGGCCTCACGGACCAAAAACCCTAAGAAGAAGAATCATCCAAGGAGGCTTAATCCGAGC 2012
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1380 TTGGCCTCATGGACCAAAAACACTAAGAAGAAGAATCATCCAAGGAGGCTTAATCCGTGC 1439
Query 2013 TGTCAGCGAGAGTTGGTATCCAGCTTCTGATGATGACTTTGGTCTCTTGCTTGAAGACGA 2072
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1440 TGTGAGCGAGAGTTGGTATCCAGCTTCTGATGATGATTTTGGTCTCTTGCTTGAAGACGA 1499
Query 2073 CATTGAAGTCTCTCCTTATTATTTCCTCTGGATTAAATACGCTCTACTCGCTTACCACTA 2132
||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 1500 CATTGAAGTCTCTCCATATTATTTCCTCTGGATCAAATACGCTTTACTTGCTTACCACTA 1559
Query 2133 CGACCCTCAAGTCTCCTTCCCTGAACTCTCCTCGATCTCTCTTTACACACCCAAAATCGT 2192
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1560 CGACCCTCAAGTCTCTTTCCCTGAACTCTCCTCGATCTCTCTTTACACGCCCAAAATCGT 1619
Query 2193 CGAAGTCGTTAAAGAGAGACCCAAATGGAACCCAACAGATTTCTTCAAACAAATCCATCC 2252
||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1620 TGAAGTTGTCAAAGAGAGACCCAAATGGAACCCAACAGATTTCTTCAAGCAAATCCATCC 1679
Query 2253 ACACACACCTTACCTTCATCAACTACCATGCAGCTGGGGAGCCGTTTTCTTCCCAAAGCA 2312
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1680 TCACACACCTTACCTTCACCAATTACCATGCAGCTGGGGAGCCGTTTTCTTCCCAAAGCA 1739
Query 2313 ATGGAGAGAGTTCTATGTCTACATGAACATGAGATTCACGGAGAACGCCAAAGCTAACCC 2372
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1740 ATGGAGAGAGTTCTATGTCTACATGAACATGAGATTCACAGAGAACGCGAAAGCTAACCC 1799
Query 2373 GGTTCAGATTCCAAAATCGAGAACCAACGGTTGGCAAGCTTCTTGGAAGAAATTCTTAAT 2432
|||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1800 GGTTCAGATTCCGAAATCAAGAACCAACGGTTGGCAAGCGTCATGGAAGAAATTCTTAAT 1859
Query 2433 CGACATGATGTACCTAAGAGGATACGTTAGTCTCTACCCAAACTTCCCTAACCAATCAAG 2492
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1860 CGACATGATGTACCTGAGAGGATACGTTAGTCTATACCCAAACTTCCCTAACCAATCAAG 1919
Query 2493 CTTCTCAACCAACCACATGGAACCAGGAGCGCACATCGCAGCTAAAGACAACGTCGTAAA 2552
|||||||||||||||||||||||||||||| |||||||||||||||||||| || || ||
Sbjct 1920 CTTCTCAACCAACCACATGGAACCAGGAGCTCACATCGCAGCTAAAGACAATGTGGTGAA 1979
Query 2553 ACACAACAAAACCGACTTT-GAAGTTCCATTGCTTATGGATGATTTCAGAAACTTCTTAC 2611
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 ACACAACAAAACCGA-TTTCGAAGTTCCATTGCTTATGGATGATTTCAGAAACTTCTTAC 2038
Query 2612 CGAACCAGAAACTCCCTCCGCTTTCTAAGCTTCCATCACTCAATCTCTTCAACATGCCGG 2671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2039 CGAACCAGAAACTCCCTCCGCTTTCTAAGCTTCCATCACTCAATCTCTTCAACATGCCGG 2098
Query 2672 TTTCTCTTAAAGGTCTTAAAGCTGCAGGAGCTAAGCTTGGTCAAGATGTTCTTCGGTGCA 2731
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2099 TTTCGCTTAAAGGTCTTAAAGCTGCAGGAGCTAAGCTTGGTCAAGATGTTCTTCGTTGCA 2158
Query 2732 ACAATGTCTCTGAGATCGTCGCTGTCGATCATCAAACAGGTTTACCGGCTAGATGCATGA 2791
|||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 2159 ACAATGTCTCTGAGATTGTCGCCGTCAATCATCAGACAGGTTTACCGGCTAGATGCATGA 2218
Query 2792 AATTCTGA 2799
||||||||
Sbjct 2219 AATTCTGA 2226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139062765996
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5