BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917822
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60770.1 | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter 2... 2497 0.0
> AT5G60770.1 | Symbols: ATNRT2.4, NRT2.4 | nitrate transporter
2.4 | chr5:24444396-24447026 FORWARD LENGTH=1584
Length=1584
Score = 2497 bits (1352), Expect = 0.0
Identities = 1497/1569 (95%), Gaps = 2/1569 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGATGGTTTTGGTGAACCGGGAAGCTCAATGCACGGAGTCACCGGCCGAGAACAA 60
||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1 ATGGCCGATGGTTTTGGTGAACCGGGAAGCTCAATGCATGGAGTCACCGGCAGAGAACAA 60
Query 61 AGCTATGCATTCTCCGTCGAGTCTCCGGTGGTTCCTTCCGACACATCAGCAAAATTCTCT 120
|||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 61 AGCTATGCATTCTCTGTCGAGTCTCCGGCAGTTCCTTCCGACTCATCAGCAAAATTTTCT 120
Query 121 CTCCCCGTGGACACCGAACACAAAGCCAAAGTCTTCAAACTCTTATCCTTTGAAGCTCCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCCCGTGGACACCGAACACAAAGCCAAAGTCTTCAAACTCTTATCCTTTGAAGCTCCA 180
Query 181 CACATGAGAACTTTCCATCTTGCTTGGATCTCATTCTTCACTTGCTTCATTTCCACTTTC 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATATGAGAACTTTCCATCTTGCTTGGATCTCATTCTTCACTTGCTTCATTTCCACTTTC 240
Query 241 GCTGCTGCTCCTCTTGTCCCCATCATTCGAGATAACCTTAATCTTACCAGACAAGATGTT 300
||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct 241 GCTGCTGCTCCTCTTGTCCCCATCATTAGAGATAACCTTAATCTCACAAGACAAGATGTC 300
Query 301 GGAAATGCTGGTGTTGCTTCTGTCTCTGGCAGTATCTTCTCTAGGCTTGTTATGGGAGCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAAATGCTGGTGTTGCTTCTGTCTCTGGCAGTATCTTCTCTAGGCTTGTTATGGGAGCA 360
Query 361 GTTTGTGATCTCCTTGGGCCACGTTATGGCTGCGCTTTCCTCGTCATGCTCTCTGCTCCG 420
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 GTTTGTGATCTCCTTGGGCCACGTTATGGCTGTGCTTTCCTCGTCATGCTCTCTGCTCCA 420
Query 421 ACCGTCTTCTCCATGTCGTTCGTTGCTAATGCCGGCGGGTACATAACGGTGAGGTTCATG 480
||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||
Sbjct 421 ACCGTCTTCTCCATGTCTTTCGTTGGTGGTGCCGGAGGGTACATAACGGTGAGGTTCATG 480
Query 481 ATCGGGTTCTGCCTCGCGACTTTCGTGTCATGCCAATACTGGATGAGCACAATGTTCAAT 540
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 481 ATCGGGTTCTGCCTGGCGACTTTCGTGTCATGCCAGTATTGGATGAGCACAATGTTCAAT 540
Query 541 GGTCAGATCATAGGTCTAGTGAACGGGACAGCGGCCGGATGGGGGAACATGGGCGGTGGG 600
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 541 GGTCAGATCATAGGTCTAGTGAACGGGACAGCGGCAGGGTGGGGGAACATGGGCGGTGGG 600
Query 601 GTCACGCAGTTGCTCATGCCGATGGTCTATGAAATCATTCGACGGTTAGGGTCCACGTCC 660
||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 601 GTCACTCAGTTGCTCATGCCAATGGTCTATGAGATCATCCGACGGTTAGGGTCCACGTCC 660
Query 661 TTCACGGCGTGGAGGATGGCTTTCTTTGTCCCCGGGTGGATGCACATCATCATGGGGATC 720
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 TTCACCGCATGGAGGATGGCTTTCTTCGTCCCCGGGTGGATGCACATCATCATGGGGATC 720
Query 721 TTGGTCTTGACTTTAGGACAAGACCTCCCTGATGGTAATAGAAGCACACTCGAGAAGAAA 780
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGGTCTTGACTCTAGGGCAAGACCTCCCTGATGGTAATAGAAGCACACTCGAGAAGAAA 780
Query 781 GGTGTTGTTACAAAAGACAAGTTCTCAAAGGTTTTATGGTACGCAATCACGAACTATAGG 840
|||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 GGTGCAGTTACTAAAGACAAGTTCTCAAAGGTTTTATGGTACGCGATCACGAACTATAGG 840
Query 841 ACATGGGTTTTCGTGCTGCTATATGGATACTCCATGGGAGTAGAGCTCACAACGGATAAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 ACATGGGTTTTCGTGCTGCTATATGGATACTCCATGGGAGTAGAGCTCACAACCGATAAC 900
Query 901 GTCATCGCTGAGTACTTTTTCGACAGGTTCCATCTTAAGCTTCACACGGCCGGTATAATC 960
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 901 GTCATCGCTGAGTACTTTTTCGACAGGTTCCATCTTAAGCTTCATACCGCCGGTATAATC 960
Query 961 GCGGCAAGCTTTGGTATGGCAAACTTCTTTGCTCGTCCTATTGGTGGTTGGGCGTCGGAC 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 961 GCGGCAAGCTTTGGTATGGCAAACTTCTTTGCCCGTCCTATTGGTGGTTGGGCCTCAGAT 1020
Query 1021 ATTGCCGCTAGACGCTTCGGCATGAGAGGCCGTCTCTGGACCCTATGGATCATCCAAACC 1080
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATTGCGGCTAGACGCTTCGGCATGAGAGGCCGTCTCTGGACCCTATGGATCATCCAAACC 1080
Query 1081 TTAGGCGGTTTCTTCTGCCTTTGGCTAGGCCGAGCCACGACGCTCCCGACCGCGGTTGTC 1140
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1081 TTAGGCGGTTTCTTCTGCCTATGGCTAGGCCGAGCCACCACGCTCCCGACCGCGGTTGTC 1140
Query 1141 TTCATGATCCTCTTCTCTCTCGGGGCTCAAGCCGCTTGTGGAGCCACCTTTGCCATCATA 1200
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1141 TTCATGATCCTCTTCTCTCTCGGCGCTCAAGCCGCTTGTGGAGCTACCTTTGCTATCATA 1200
Query 1201 CCTTTCATCTCACGCCGGTCCTTAGGCATCATCTCTGGTCTTACTGGAGCCGGAGGAAAC 1260
||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||
Sbjct 1201 CCTTTCATCTCACGCCGCTCCTTAGGGATCATCTCTGGTCTTACTGGAGCTGGTGGAAAC 1260
Query 1261 TTCGGCTCTGGTTTGACCCAGCTTGTATTCTTCTCGACCTCAACTTTCTCTACGGAACAA 1320
|||||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||
Sbjct 1261 TTCGGCTCTGGTTTGACCCAACTCGTATTCTTCTCGACCTCAACGTTCTCCACGGAACAA 1320
Query 1321 GGGCTCACGTGGATGGGGGTGATGATAATGGCGTGTACATTACCCGTCACATTAGTGCAT 1380
||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1321 GGGCTGACATGGATGGGGGTGATGATTATGGCGTGTACATTACCCGTCACTTTAGTGCAC 1380
Query 1381 TTCCCGCAATGGGGAAGCATGTTTTTGCCTTCCACGGAAGATGAAGTGAAGTCTACGGAG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TTCCCGCAATGGGGAAGCATGTTTTTGCCTTCCACGGAAGATGAAGTGAAGTCTACGGAG 1440
Query 1441 GAGTATTACTACATGAAAGAGTGGACAGAG-CCGGAGAAGCAAAAGGGTATGCATGAAGG 1499
|||||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||
Sbjct 1441 GAGTATTATTACATGAAAGAGTGGACAGAGACCG-AGAAGCGAAAGGGTATGCATGAAGG 1499
Query 1500 GAGTTTAAAGTTCGCCGTCAATAGTAGATCGGAGCGTGGACGGCGCGTGGCTTCTGCACC 1559
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GAGTTTGAAGTTCGCCGTGAATAGTAGATCGGAGCGTGGACGGCGCGTGGCTTCTGCACC 1559
Query 1560 ATCTCCTCC 1568
||||||||
Sbjct 1560 GTCTCCTCC 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5