BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917865
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61160.1 | Symbols: AACT1 | anthocyanin 5-aromatic acyltrans... 941 0.0
> AT5G61160.1 | Symbols: AACT1 | anthocyanin 5-aromatic acyltransferase
1 | chr5:24608724-24610304 FORWARD LENGTH=1581
Length=1581
Score = 941 bits (509), Expect = 0.0
Identities = 603/648 (93%), Gaps = 8/648 (1%)
Strand=Plus/Plus
Query 166 GAGCTACCGATTTATGCCGAATTGGGGGCTGTTGTATCCCTGCAAGTCACTTTGTTCCCG 225
||||||||||||||| | || | ||||||||||||||| |||||||||||||||||||||
Sbjct 451 GAGCTACCGATTTATTCTGACTCGGGGGCTGTTGTATCTCTGCAAGTCACTTTGTTCCCG 510
Query 226 AAACAAGGCTTCTGCATTGGAACCACAATCCACCATGTCGTCGTGGACGGCAAAACTGCT 285
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||
Sbjct 511 AAACAAGGCTTCTGCATTGGAACCACAGCCCACCATGTCGTCTTGGACGGCAAAACGGCT 570
Query 286 GAAAAATTTAACAAAGCATGGGCTCATGCTTGTAAACATGGGACCATACCGAAAATTTTA 345
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct 571 GAAAAATTTAACAAAGCATGGGCTCACACTTGTAAACATGGCACCATACCGAAAATTCTA 630
Query 346 CCAACGGTTTTAGATCGTTCTGTCGTCAATGTTCCAGCCGGACTTGAACAAAAGATGCTC 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CCAACGGTTTTAGATCGTTCTGTCGTCAATGTTCCAGCCGGACTTGAACAAAAGATGCTC 690
Query 406 GGACTTCTGCCGTATCTCACGGA-G--GACAAAGAGAACGCAAGAACCCTAAAGCTACCT 462
| ||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||
Sbjct 691 GAACTTCTGCCGTATCTTACGGAGGACGACAAAGAGAACGGAAGAACCCTAAAGCTACCT 750
Query 463 CCAGTAAAAGAGATTTTCGCTGAAGACAACGTCCTCCGAACCACCATCGAGATGACTCCT 522
||||| ||||||||| |||| |||||||||||||||||| |||||||||||| | ||||
Sbjct 751 CCAGTCAAAGAGATTAACGCTAAAGACAACGTCCTCCGAATCACCATCGAGATAAGTCCT 810
Query 523 GAAAATATTGAGAAACTCAAAGAGCGAGCCAAGAAAGAGTCAACACGCGCTGAGCTTCAC 582
||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 811 GAAAACATTGAGAAACTCAAGGAGAGAGCCAAGAAAGAGTCAACACGCGCTGAGCTTCAC 870
Query 583 TTGTCAACGTTCGTAGTCACGTTCGCCCATGTGTGGACATGCATGGTGAAGGCCCGTAGA 642
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 871 TTGTCAACGTTCGTAGTCACGTTCGCCCATGTGTGGACATGCATGGTGAAGGCACGTAGT 930
Query 643 GGCGACCCGGAGCGACCGGTTCGTTTCATGTATGCTGCTGATTTTAGAGA-CCGGTTAGA 701
|| ||||| | |||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 931 GGTGACCCAAACCGACCGGTTCGTTTCATGTACGCTGCTGATTTTAG-GAACCGGTTAGA 989
Query 702 CCCACCAGTCCCTGTGACATACTTCGGGACGTGTGTCTTAGCCATTGATTTCTATAAATA 761
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 990 ACCACCAGTCCCTGTGACATACTTCGGGACTTGTGTCTTAGCCATGGATTTCTATAAATA 1049
Query 762 CAAAGCTAAG-ACGTTTTTGGGAGAAGATGGATTTGTCAACACCAGTC 808
|||||||||| | |||| |||||||||||||||||||||||||| |||
Sbjct 1050 CAAAGCTAAGGA-GTTTATGGGAGAAGATGGATTTGTCAACACC-GTC 1095
Score = 436 bits (236), Expect = 2e-121
Identities = 264/277 (95%), Gaps = 3/277 (1%)
Strand=Plus/Plus
Query 805 AGTCAACTTGGAAGGTGTATGAGGGAAGGAACAAAGACGATGAAATGGGGTACACAGTTG 864
||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1142 AGTCAACTTGGAAAGTGTATGA-GGAAGGAACAAAGACAATGAAATGGGGTACACAGTTG 1200
Query 865 TTGGTCGTAAACGGGTCCAACCAGATAGGGATGTACGAAACGGATTTCGGGTGGGGAAGA 924
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1201 TTGGTCGTAAACGGGTCGAACCAGATTGGGATGTACGAAACGGACTTCGGGTGGGGAAGA 1260
Query 925 CCCGTTCACACTGAGACATTGTCTATCTACAAGAACGATGAGTTCTCTATGTCCAAGAGG 984
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CCCATTCACACTGAGACAATGTCTATCTACAAGAACGATGAGTTCTCTATGTCCAAGAGG 1320
Query 985 AGAGATGGGATCGGTGGCGTCGAGATTGGCGTCTCTTTGAAGAAACTTGAGATGGATG-T 1043
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1321 AGAGATGGTATCGGTGGCGTCGAGATTGGCATCTCTTTGAAGAAACTTGAGATGGATACT 1380
Query 1044 TTTCTTGTCTTTATTTTACAAATGGATTGGAAACTGA 1080
||||| |||||||||||||||||||||||||||||||
Sbjct 1381 TTTCT-GTCTTTATTTTACAAATGGATTGGAAACTGA 1416
Score = 97.1 bits (52), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 118 GATGCGGATTTCTCACGTATCTCTGGCAGAGGGCTTCGTCCAGAGCTAGAGCTAC 172
||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 382 GATGCGGATTTCTCACGTATCTCTGGCAGAGGGCTTCGTCCAGAGCTAGAGTTAC 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5