BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917886

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61360.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   809    0.0  


> AT5G61360.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G07730.1); 
Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses 
- 0; Other Eukaryotes - 4 (source: NCBI BLink). | chr5:24671014-24671868 
FORWARD LENGTH=741
Length=741

 Score =  809 bits (438),  Expect = 0.0
 Identities = 572/634 (90%), Gaps = 20/634 (3%)
 Strand=Plus/Plus

Query  28   GAAGAAC--A-GAGGATCACACACTTTGATCTGAGAAACGATCCCCAATTTCCAATGGTT  84
            |||||||  | ||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct  50   GAAGAACAGAGGAGGATCACACACTTGGATCTGAGAAACGAGCCCCAGTTTCCAATGGTT  109

Query  85   TTCGTTAGAGAATCGAC-TGATTTCGCTAAGGACGATCTCGCTATCTTCCCGCCGATCAA  143
            ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  110  TTCGTTAGAGAATCGACTTG-TTTCGCTAAGGACGATCTCGCTATCTTCCCGCCGATCAA  168

Query  144  CCACGAGAATCTCTTCATTAACGGATTCGATAAGGACCGAGAATATCCGTCGGAATCCTC  203
            |||||||||  || ||  | || |  || | | ||| |  |||| |||||||| ||| ||
Sbjct  169  CCACGAGAA--TC-TC--T-AC-G--TC-A-ACGGA-CTCGAATCTCCGTCGGTATCATC  216

Query  204  CTCTCCTTCATC-T--TCGTCGAGACTCTCAGATTCTTCCTTGTCTCCGTCCGATTCAGA  260
            |||| ||||||| |  |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  217  CTCTTCTTCATCTTCCTCGTCGAGACTCTCAGATTCGTCCTTCTCTCCGTCCGATTCAGA  276

Query  261  CGAACAATATCAGTTTTGCCGGAAATCGCATTCTCAGCCGTCAGAAGCTGTCGGGAAATC  320
            |||||||| ||| ||| |||||||||||||||||||||| || |||| ||||||||||||
Sbjct  277  CGAACAATTTCAATTTAGCCGGAAATCGCATTCTCAGCCATCGGAAGATGTCGGGAAATC  336

Query  321  TCGGTGGAAATCCATACTTGAGATTGATATTATCCAAGTTTGGTGGAAGATTCTTCTCGC  380
            || |||||||||| || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct  337  TCCGTGGAAATCCGTAATTGAGATTGATATTATCCAAGGTTGGTGGAAGATTCTTCTCGC  396

Query  381  TCGAGTAATGCCAAAGTTCCAGAATTTGGTGACTTGCTTCTCCAGAAATAGTCTCTGTTC  440
            |||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct  397  TCGAGTAATGTCAAATTTCCAGAATTTGGTTACCTGCTTCTCCAGAAATAGTCTCTGTTC  456

Query  441  CTTCTCGAAGACTCTCCGGTCATTTTATCCGGTCATGGTCATAGTAATTTGGTGGTGGAT  500
            |||||| ||||||||||||||||||||| |||| ||||||||| |  |||||||||||| 
Sbjct  457  CTTCTCAAAGACTCTCCGGTCATTTTATTCGGTTATGGTCATATTCCTTTGGTGGTGGAA  516

Query  501  GCGTAACCGAACTCGCCGGCGACTTCAAAAAGGAGAAATCATCGCAGCTCATTTTAGAGA  560
            |||||||||||||||||| |||||| ||||||| ||||||||||| |||||| | |||||
Sbjct  517  GCGTAACCGAACTCGCCGACGACTTGAAAAAGGTGAAATCATCGCTGCTCATCTCAGAGA  576

Query  561  TACTATCAAAGAGAGAGACGAGAGAATAGCTCAACTCTTGCATCAGATAACTCAGATGAA  620
            ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  577  TACAATCAAAGAGAGAGACGAGAGAATAGCTCAACTCTTGCATCAGATTACTCAGATGAA  636

Query  621  CGAGTTACTTGTAAAAATAACACATTCGAATTGA  654
            ||||||||||||||||||||||||||| ||||||
Sbjct  637  CGAGTTACTTGTAAAAATAACACATTCCAATTGA  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31597278463


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5