BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg917892

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61412.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   182    2e-45


> AT5G61412.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G33145.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr5:24686755-24687042 REVERSE LENGTH=288
Length=288

 Score =  182 bits (98),  Expect = 2e-45
 Identities = 181/218 (83%), Gaps = 18/218 (8%)
 Strand=Plus/Plus

Query  1    ATGAGTGGGAAAA-GCAGTAGCGGCGGTGGAGGAAAGAGCGGCGGCGGTGGAGG-AA-AG  57
            |||||| |||||| |||| |  | |||||||||||||||||| |||| |||||| || ||
Sbjct  49   ATGAGT-GGAAAACGCAGCAATGTCGGTGGAGGAAAGAGCGGTGGCGCTGGAGGTAAGAG  107

Query  58   -AGCGGCGGCGGTA-ATGGAAGTGGCAACGGAGGAAAAAGTGG-TG-GAAGTG-GCA--A  110
              | || ||||| | |  | |||||   |||||||||||| ||  | | || | |||  |
Sbjct  108  TGGTGGTGGCGG-ACAAAGCAGTGG---CGGAGGAAAAAGCGGCGGCGGAG-GAGCAGGA  162

Query  111  -C-GGTAACATGGTAGCACCAGGGACAAATGGGGCTGCTTACATTTCAAGAGGTGGATTT  168
             | ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| 
Sbjct  163  GCAGGTAATATGGTAGCACCAGGGACAAATGGGGGTGCTTACATCTCAAGAGGTGGATTC  222

Query  169  GAGAGTAACCCTCAAGGTTACTTTAGTAACTTGCATGG  206
            ||||||||||||||||||||||||||||||||||||||
Sbjct  223  GAGAGTAACCCTCAAGGTTACTTTAGTAACTTGCATGG  260



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10707030537


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5