BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917939
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61850.1 | Symbols: LFY, LFY3 | floral meristem identity con... 1967 0.0
> AT5G61850.1 | Symbols: LFY, LFY3 | floral meristem identity control
protein LEAFY (LFY) | chr5:24844295-24846933 FORWARD
LENGTH=1263
Length=1263
Score = 1967 bits (1065), Expect = 0.0
Identities = 1213/1282 (95%), Gaps = 20/1282 (2%)
Strand=Plus/Plus
Query 1 ATGGATCCTGAAGGTTTCACGAGTGGCTTATTCCGATGGAACCCAACGAGAGCAATGGTT 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 ATGGATCCTGAAGGTTTCACGAGTGGCTTATTCCGGTGGAACCCAACGAGAGCATTGGTT 60
Query 61 GC-AGCACCACCTCCGGTTCCACCTCCGCCGCAGCAACAGCCGGCAACACCTCAGATGGC 119
| |||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||
Sbjct 61 -CAAGCACCACCTCCGGTTCCACCTCCGCTGCAGCAACAGCCGGTGACACCGCAGACGGC 119
Query 120 GGCTTTTGGGATGCGACTTGGTGGTTTAGAGGGACTGTTCGGAGCTTACGGTATACGTTT 179
||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 120 TGCTTTTGGGATGCGACTTGGTGGTTTAGAGGGACTATTCGGTCCGTACGGTATACGTTT 179
Query 180 TTACACGGCGGCGAAGATAGCGGAGTTAGGTTTTACGGCGAGCACGCTTGTGGGTATGAA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTACACGGCGGCGAAGATAGCGGAGTTAGGTTTTACGGCGAGCACGCTTGTGGGTATGAA 239
Query 240 GGACGAGGAGCTTGAGGAGATGATGAATAGTCTCTCTCACATCTTTCGTTGGGAGCTTCT 299
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GGACGAGGAGCTTGAAGAGATGATGAATAGTCTCTCTCATATCTTTCGTTGGGAGCTTCT 299
Query 300 TGTTGGTGAACGGTACGGTATCAAAGCTGCCGTTAGAGCTGAACGGAGACGATTGCAAGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTTGGTGAACGGTACGGTATCAAAGCTGCCGTTAGAGCTGAACGGAGACGATTGCAAGA 359
Query 360 AGAGGAGGAGGAGGAATCTTCTAGACGCCGTCATTTGCTACTCTCCGCCGCTGGTGATTC 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAGGAGGAAGAGGAATCTTCTAGACGCCGTCATTTGCTACTCTCCGCCGCTGGTGATTC 419
Query 420 CGGTACTCATCACGCTCTTGATGCTCTCTCCCAAGAAGATGATTGGACAGGGTTATCAGA 479
|||||||||||||||||||||||||||||||| | | || ||||||||| ||
Sbjct 420 CGGTACTCATCACGCTCTTGATGCTCTCTCCC------A--A---GA-AGGGTTATCTGA 467
Query 480 GGAACCGGTGCAACAGCAAGACCAGACAGATGCGGCTGGGAATAACGGCGGAGGAGGAAG 539
|||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 468 GGAACCGGTGCAGCAACAAGACCAGACTGATGCGGCGGGGAATAACGGCGGAGGAGGAAG 527
Query 540 TGGTTACTGGGAAGCAGGTCAAGCAAAGATGAAGAAGCAACAGCAGCAGAGACGGAGAAA 599
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 528 TGGTTACTGGGACGCAGGTCAAGGAAAGATGAAGAAGCAACAGCAGCAGAGACGGAGAAA 587
Query 600 GAAACCGATGGTGACGTCAGTGGAAACCGACGATGACGTCAACGAAGGTGATGATGACGA 659
|||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 588 GAAACCAATGCTGACGTCAGTGGAAACCGACGAAGACGTCAACGAAGGTGAGGATGACGA 647
Query 660 CGGGATGGATAACGGCAACGGAGGTGGTGGTGGTGGATTGGGGACAGAGAGACAGAGAGA 719
|||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||
Sbjct 648 CGGGATGGATAACGGCAACGGA---GGTAGTGGT---TTGGGGACAGAGAGACAGAGGGA 701
Query 720 GCACCCGTTTATCGTAACGGAGCCTGGGGAAGTGGCACGTGGCAAAAAGAACGGTTTAGA 779
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 702 GCATCCGTTTATCGTAACGGAGCCTGGGGAAGTGGCACGTGGCAAAAAGAACGGCTTAGA 761
Query 780 TTATCTGTTCCACTTGTACGAACAATGCCGTGAGTTCCTTCTTCAGGTCCAGACAATTGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TTATCTGTTCCACTTGTACGAACAATGCCGTGAGTTCCTTCTTCAGGTCCAGACAATTGC 821
Query 840 TAAAGACCGTGGCGAAAAATGCCCCACCAAGGTGACGAACCAAGTGTTCAGGTACGCGAA 899
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 822 TAAAGACCGTGGCGAAAAATGCCCCACCAAGGTGACGAACCAAGTATTCAGGTACGCGAA 881
Query 900 GAAATCGGGAGCGAGTTACATAAACAAGCCCAAAATGCGACACTACGTCCACTGTTACGC 959
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 882 GAAATCAGGAGCGAGTTACATAAACAAGCCTAAAATGCGACACTACGTTCACTGTTACGC 941
Query 960 TCTCCACTGCCTAGACGAAGACGCTTCAAACGCTCTCCGAAGAGCGTTTAAAGAACGCGG 1019
||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 942 TCTCCACTGCCTAGACGAAGAAGCTTCAAATGCTCTCAGAAGAGCGTTTAAAGAACGCGG 1001
Query 1020 TGAGAACGTTGGCTCGTGGCGTCAGGCTTGTTACAAGCCACTTGTGAACATTGCTTGTCG 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1002 TGAGAACGTTGGCTCATGGCGTCAGGCTTGTTACAAGCCACTTGTGAACATCGCTTGTCG 1061
Query 1080 TCATGGCTGGGATATAGACGCCGTCTTTAACGCTCATCCTCGTCTCTCTATTTGGTACGT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1062 TCATGGCTGGGATATAGACGCCGTCTTTAACGCTCATCCTCGTCTCTCTATTTGGTATGT 1121
Query 1140 TCCAACTAAGCTGCGTCAGCTTTGCCATTTGGAGCGGAACAATGCCGTGGCTGCGGCCGC 1199
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1122 TCCAACAAAGCTGCGTCAGCTTTGCCATTTGGAGCGGAACAATGCGGTTGCTGCGGCTGC 1181
Query 1200 GGCTTTGGTTGGCGGTATTAGCTGTACCGGATCGTCTACGTCTGGCCGTGGTGGTTGCGG 1259
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1182 GGCTTTAGTTGGCGGTATTAGCTGTACCGGATCGTCGACGTCTGGACGTGGTGGATGCGG 1241
Query 1260 CGGCGACGACTTGCGTTTCTAG 1281
||||||||||||||||||||||
Sbjct 1242 CGGCGACGACTTGCGTTTCTAG 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5