BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917969
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62160.1 | Symbols: AtZIP12, ZIP12 | zinc transporter 12 pre... 1663 0.0
> AT5G62160.1 | Symbols: AtZIP12, ZIP12 | zinc transporter 12 precursor
| chr5:24960107-24961263 FORWARD LENGTH=1068
Length=1068
Score = 1663 bits (900), Expect = 0.0
Identities = 1015/1071 (95%), Gaps = 6/1071 (1%)
Strand=Plus/Plus
Query 4 ATGAGTAGATTCCGAAAAACCCTAGTTTCGGCTTTCGTTCTCTACTTGGTTATTCTACCT 63
|||||||||||||| |||||||||||||| ||||||||||||| |||||||||| | |||
Sbjct 1 ATGAGTAGATTCCGTAAAACCCTAGTTTCTGCTTTCGTTCTCTGCTTGGTTATTTTTCCT 60
Query 64 CTTCTAGTCTCAGCGGCAGAGGAAGAAAACGAATGCGGCGGATCCAAGGGTGGCTCTGCT 123
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 61 CTTCTAGTCTCAGCGGCAGAGGAAGAAAACCAATGCGGCGGATCCAAAGGTGGCTCTGCT 120
Query 124 GCGGAGAAAGCATCGGCTCTTAAATACAAGATCATAGCTTTCTTTTCCATCTTATTCGCC 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 GCGGAGAAAGCATCGGCTCTTAAATACAAGATCATAGCTTTCTTTTCCATCTTAATCGCC 180
Query 184 GGAATATTTGGCGTTTGTTTACCTATTTTTGGCCTCAAGTCGGAGAGCAACTTCTTCATG 243
||| |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 181 GGAGTATTTGGCGTCTGTTTACCTATTTTTGGCCTCAAGACGGAGAGCAATTTCTTCATG 240
Query 244 TTCGTGAAGGCATTCGCTGCCGGCGTAATCCTAGCCACCGGTTTTGTCCACATTCTTCCC 303
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 241 TACGTGAAGGCATTCGCTGCCGGCGTAATTCTAGCCACCGGCTTTGTCCACATTCTTCCC 300
Query 304 GATGCTACCGAGAGTCTCACGAGTCCGTGCCTTGGAGAAGAGCCACCGTGGGGGGATTTT 363
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 301 GATGCTACCGAGAGTCTCACGAGTTCGTGCCTTGGAGAAGAACCACCGTGGGGAGATTTT 360
Query 364 CCGATGACGGGACTCGTTGCTATGGCTGCATCGATCTTGACAATGTTGATTGAGTCCTTT 423
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CCGATGACGGGACTCGTTGCCATGGCTGCATCGATCTTGACAATGTTGATTGAATCCTTT 420
Query 424 GCTTCAGGGTATTTGAATAGATCTCGGTTGGAGAAGGAGAGTAAGACTTTGCCGGTGAGT 483
||||||||||||||||| |||||||| |||| ||| ||| |||||||| |||||||||||
Sbjct 421 GCTTCAGGGTATTTGAACAGATCTCGCTTGGCGAAAGAGGGTAAGACTCTGCCGGTGAGT 480
Query 484 ACAGGCGGAGATAAGGAGGAACATGCTCATACTGGCTCTGCTCATACTCATGCCTCACAA 543
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 ACAGGCGGAGA---GGAGGAACATGCTCACACTGGCTCTGCTCATACTCATGCCTCACAA 537
Query 544 GGACATTCTCATGGCTCTCTTCTTATTCCCCAAGATGAT---CACATTGATATGAGGAAG 600
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 538 GGACATTCTCATGGCTCTCTTCTTATTCCCCAAGATGATGATCACATTGATATGAGGAAA 597
Query 601 AAGATTGTAACTCAGATATTGGAATTGGGGATTGTGGTTCACTCAGTGATAATAGGAATA 660
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 598 AAGATTGTAACTCAGATATTGGAATTGGGGATTGTGGTTCATTCAGTGATAATAGGAATA 657
Query 661 TCTCTAGGAGTTTCTCCAAGTGTAAGCACAATAAAGCCTCTCATAGCTGCAATTACCTTC 720
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 658 TCTCTAGGAGCATCTCCAAGTGTGAGCACAATAAAGCCTCTCATAGCTGCAATTACTTTC 717
Query 721 CATCAATTGTTTGAAGGTTTTGGCCTTGGTGGTTGCATCTCTGAGGCAAAGTTTAAAGTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 CATCAATTGTTTGAAGGTTTTGGCCTTGGTGGTTGCATCTCTGAGGCAAAGTTTAGAGTA 777
Query 781 AAGAAAATTTGGGTTATGCTGATGTTCTTTGCACTCACAGCACCACTAGGTATCGGAATT 840
|||||||||||||||||| ||||||||||||||||||| |||||| |||| || ||||||
Sbjct 778 AAGAAAATTTGGGTTATGTTGATGTTCTTTGCACTCACGGCACCAATAGGGATAGGAATT 837
Query 841 GGTATTGGAGTGGCGGAGATTTACAACGAGAATAGCCCAATGGCCCTAAAAGTGTCCGGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 GGTATTGGAGTGGCGGAGATTTACAACGAGAATAGCCCAATGGCCCTAAAAGTTTCCGGT 897
Query 901 TTTCTTAACGCTGCAGCTTCTGGAATCTTGATTTACATGGCGCTTGTTGATTTGGTAGCT 960
|||||||| || | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTTCTTAATGCCACGGCCTCTGGAATCTTGATTTACATGGCGCTTGTTGATTTGGTAGCT 957
Query 961 CCACTTTTTATGAACCCCAAAGCTCAGAGTAGTATGAAGATACAAGTAGCTTGTAGCGTA 1020
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 958 CCACTTTTTATGAACCAAAAAACTCAGAGTAGTATGAAGATACAAGTAGCTTGTAGTGTA 1017
Query 1021 TCTCTTGTTCTTGGTGCTGGTTTGATGTCTCTTTTAGCTATTTGGGCTTGA 1071
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCTCTTGTTGTTGGTGCTGGTTTGATGTCTCTTTTAGCTATTTGGGCTTGA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5