BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg917996
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62400.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 717 0.0
> AT5G62400.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:25054614-25055606 REVERSE LENGTH=645
Length=645
Score = 717 bits (388), Expect = 0.0
Identities = 512/569 (90%), Gaps = 19/569 (3%)
Strand=Plus/Plus
Query 1 ATGAAGACGACGAAGGCGAAAGCAAACACAATCTTGGAGAAGAAACTCGAAGAACTCGAG 60
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1 ATGAAGACGACGAAGGCGAAAGCAAACACAATCTTGGGGAAGAAACTCGAAGAACTTGAG 60
Query 61 TGTTTGCTACAAGAATTTGGTTCTGGCAATGTTGATCTTAATGCATACCGGGAATTC-AA 119
| || ||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |
Sbjct 61 TATTACCTACAAGAATTCGGTTCTGGCAATGGTGATCTTAACGCATACCGGGAATTCGGA 120
Query 120 ACTCCGCTTTGTTTTCACGCATACCCTTTTATGTGCGGAGATATCGTCGGTTAAGGACGA 179
|| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AC-CCGGTTTGTTTTCACGCAAACCCTTTTATGTGCGGAGATATCGTCGGTTAAGGACGA 179
Query 180 TGAAGACGAAGA-GA--TGCTCAAACTTCGTTGCATGGCTAAGAGGTTAACCGAACTTGA 236
|||||||||||| || || | |||||||||| |||||||||||||||||||||||||||
Sbjct 180 TGAAGACGAAGAAGAGATGTTGAAACTTCGTTTCATGGCTAAGAGGTTAACCGAACTTGA 239
Query 237 AGAGGCTTTCAAGGAATTGACCAGTTCAATCAACCAACCGGACATGCAGAGTTTGGAAAG 296
|||||||||||||||| |||| || |||||||||||| |||| ||||||||||||||||
Sbjct 240 AGAGGCTTTCAAGGAAAAGACCGGTCCAATCAACCAACTGGACTTGCAGAGTTTGGAAAG 299
Query 297 TGGTGGTGGTGTTGTCAATGTTGATGAGACCGGTTTGGTTCGCTCATTGGTTGAATCGTT 356
|||||||||||| | | |||||||| |||||||||||| ||||||||||||||
Sbjct 300 TGGTGGTGGTGT----A--G---ATGAGACCACTTTGGTTCGCTCGTTGGTTGAATCGTT 350
Query 357 ACACGAAGAATATCAAGATGCG--T-CGTTAGAGGAGAAGTGGGCGAGGAGAAAAACCGA 413
||| | |||||||||||||||| | | ||||| ||||||| ||||| ||||| ||||||
Sbjct 351 ACATGCAGAATATCAAGATGCGAATTCATTAGAAGAGAAGTTGGCGATGAGAAGAACCGA 410
Query 414 GAAGATGAAGACGAAGCGGTTCAGGGGTTTGGTTAGTTTTGGTATAGTTGGTTTTGTTGC 473
||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 411 GAAGATGAAGAAGAAGCGGTTTAGGGGTTTGGTTAGTTTTGGTATAGTTGGTTTTGTTAC 470
Query 474 TG-GTATGGCCCCACGTGCCATCTTTTACCAGGTTGTAATCCCACCGAAAGATTCTCTTG 532
| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 471 -GAGTATGGCCCCACGTGCCATCTTTTACCCGGTTGTAATCCCACCGAAAGATTCTCTTG 529
Query 533 TCAACGTAATATTTTACACGCTTCAAGGT 561
|| |||||||| | ||||||||||||||
Sbjct 530 TCGACGTAATACCTCACACGCTTCAAGGT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5