BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918021
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62580.1 | Symbols: | ARM repeat superfamily protein | chr5... 2946 0.0
> AT5G62580.1 | Symbols: | ARM repeat superfamily protein | chr5:25119863-25122526
FORWARD LENGTH=2262
Length=2262
Score = 2946 bits (1595), Expect = 0.0
Identities = 1749/1822 (96%), Gaps = 15/1822 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACGAAGAACACGAAGCAAAACATGTCCGTGCTGTTAACTAAGCTCGGAGATCGA 60
||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||
Sbjct 148 ATGGCGACGAAGAACTCAAAGCAAAACATGTCCGTGTTGTTAACTAAGCTCGGAGATCGA 207
Query 61 GATACTTTCACAATGGCGGCTCGAGAGCTTGATTTAATGGCTAGACAGATTGAT-C--CT 117
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 208 GATACTTTCACAATGGCGGCTCGTGAGCTTGATTTAATGGCTAGACAGATTGATCCTTCT 267
Query 118 TCCTCCTCCGGGAATCTCCAGTCGTTTATTTCCGTTATACTCTCCGCCGACACCGGAGAT 177
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 268 TCCTCCTCCGGGAATCTCCAGTCGTTTATTTCCGTTATACTCTCCGTCGACACCGGAGAT 327
Query 178 AAACCGGCGGTTCGTAAGCATTGTATTCACTTGctctctgttttatcagtttctcttcct 237
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 328 AAACCGGCGGTTCGTAAGCATTGTATTCACTTGCTCGCCGTTTTATCAGTTTCTCTTCCT 387
Query 238 ctcaattctctgtctcctttcctctctAAGATCCTCACTCGCATCACGAGACGTCTCCGT 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 CTCAATTCTCTATCTCCTTTCCTCTCTAAGATCCTCACTCGCATCACGAGACGTCTCCGT 447
Query 298 GATCCCGACTCTTCGATTCGATCAACTTGCGTCGCGGCTGTGTCGGCGATCTCTTCACGT 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GATCCCGACTCTTCGATTCGATCAACTTGCGTCGCGGCTGTGTCGGCGATCTCTTCACGC 507
Query 358 ACGACGAAGCCTTCGTTTTATTCGGCGTTTATGAAGCCGTTAGCGGATACGCTTTTCACT 417
|||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 508 ACGACGAAGCCTCCGTTTTACTCGGCGTTTATGAAGCCGTTAGCAGATACACTTTTCACT 567
Query 418 GAGCAAGAGGTTAATGCGCAGATCGGAGCTGCGCTTTGTCTCGCGGCGGCGATTGATTCG 477
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 568 GAGCAGGAGGTTAATGCGCAGATCGGAGCGGCGCTTTGTCTCGCGGCGGCGATTGATTCA 627
Query 478 GCGTCTGATCCGGATCCGGTTCGGTTAGGGCAGACACTTTTGCCTAGACTTGAGAAGCTG 537
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 628 GCGTCTGATCCGGATCCGGTTCGGTTAGGGCAGACACTTTTGCCTAGGCTAGAGAAGCTC 687
Query 538 GTGAAGTGTAATGCGTTTAAGGCGAAATCGGCGGGAGTTGTTGTGATCGGAAGTGTGATT 597
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GTGAAGTGTAACGCGTTTAAGGCGAAATCGGCGGGAGTTGTTGTGATCGGAAGTGTGATT 747
Query 598 GGTGCTGGTGGTTTGTCTGGAACCACTGTGAGCTCCGGTGGATTGAAAGGACTTGTGGAA 657
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 748 GGTGCTGGTGGTTTGTCTGGAACCAGTGTGAGCTCCGGTGGATTGAAAGGACTTGTGGAT 807
Query 658 TGCTTATTGAGCTTCTTGGTTAGTGAAGATTGGGCCGCGAGGAAAGCAGCTGCTGAAGCT 717
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 808 TGCTTATTGAGCTTCTTGGTTAGTGAAGATTGGGCGGCGAGGAAAGCAGCTGCTGAAGCT 867
Query 718 TTGGGGAGGTTAGCTACAATGGAGAGAAATGAGTTAGGTGAGTTCAAGGCTAAATGCTTG 777
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 868 TTGGGGAGGTTAGCTACAATGGAGAGAAATGAGCTAGGTGAGTTCAAGGCTAAGTGCTTG 927
Query 778 AAGATCTTTGAAAGCAGGAAATATGATAAGGTGAAAGCTGTGAGAGAGGTGATGAATCAG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 AAGATCTTTGAAAGCAGGAAATATGATAAGGTGAAAGCTGTGAGAGAGGTGATGAATCAG 987
Query 838 ATGATGGAGGCATGGAAACAGGTTCCAGATTTATCAGAAGAGGTTTCTCCACCCAGATCT 897
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 ATGATGGAGGCTTGGAAACAGGTTCCAGATTTATCAGAAGAGGTTTCTCCACCCAGATCT 1047
Query 898 AATGCTTCTTCTAAAGGTGATGCAAGTGATGGACGATATCCTTCAGGATCTAGAGTTGCT 957
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1048 AATGCTTCTTCTAAAGGTGATGCAAGTGATGGACGATATCCTTCAGGGTCTAGAGTTGGT 1107
Query 958 TCAACACCTGCTAAATCAAGAACTCATCTAGTTAACAGATCGACTCCACCCAGGAGTTCA 1017
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1108 TCAACACCTGCTAAATCAAGAACTCATCTGGTTAACAGATCGACTCCACCGGGGAGTTCA 1167
Query 1018 CTAGCCACCACGGCTAGGAAACAGGCTAGCAGAAAAAGCATTGATCAGAAGAAAACCAGT 1077
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1168 CTAGCCACCACGGCTAGGAAGCAGGCTAATAGAAAAAGCATTGATCAGAAGAAAACCAGT 1227
Query 1078 CTAACGGCATCACATACAAAACCAAATGTGAGGAGAAGATTGGACTGGAAAGCTGGAGGA 1137
||||| ||||||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1228 CTAACAGCATCACTTACAAAACCAAACGTGAGGAGAAGATTGGAATGGAAAGCTGGAGGA 1287
Query 1138 GCTAGTATTCCCACTGGTGTGCCTCTTGAAGACGAACAACATCGTGACCATAACGAGAAT 1197
||||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||||||
Sbjct 1288 GCTAGTATTCCCACTGGTGTGTCTCTTGAAGACGAACAACATTGTGATCATGACGAGAAT 1347
Query 1198 GCAAAGGAAACGAGTCATTCTAGTCACAATACGATTCAGAAGCTAGGAGGTGTTTCCAGT 1257
|| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 1348 GCGAAGGAAACGAGTCATTCTAGTCACAATACGGTGCAGAAGTTAGGAGGTGTTTCCAGT 1407
Query 1258 TCTCTTAATGGCAATATCCCACCATCCGGTGCTACAATGGTAACAGGGCATCATGTCTTG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1408 TCTCTTAATGGCAATATCCCACCATCCGGTGCTACAATGGTAACAGGGCATCACGTCTTG 1467
Query 1318 TCTGAAAACCCAAATAGTAGTAACTGCAAAGGGCTTGAAGATATATCTCTGCTCCGTAAT 1377
||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct 1468 TCTGAAAACCCAAATAGTAATAACTGCAAAGGGCTTGAAGATATATCTTTGATCCGTAAT 1527
Query 1378 CAGCTTGTTCAGATTGAACAACAGCAAGCCAATCTAATGGATCTTCTTCAGAGATTTGTC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 CAGCTTGTTCAGATTGAACAACAGCAAGCCAATCTAATGGATCTTCTTCAGAGATTTGTC 1587
Query 1438 GGAAGCTCACAACACGGAATGCGCGGTCTGGAAACACGAGTTCACGGCTTAGAACTTGCT 1497
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1588 GGAAGCTCGCAACACGGAATGCGTGGTCTGGAAACACGAGTTCACGGATTAGAACTTGCT 1647
Query 1498 CTGGATGAAATATCTTATGACTTGGCGGTTTCAAATGGGAGAATGAGTAACGGTTCAAGC 1557
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 CTGGACGAAATATCTTATGACTTGGCGGTTTCAAATGGGAGAATGAGTAACGGTTCAAGC 1707
Query 1558 AGAAACAACTGTTGTCTCCTTCCTTCTGGAAGTTTCATCAAATCTAAATTCTGGAAGAAA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 AGAAACAACTGTTGTCTCCTTCCTTCTGGAAGTTTCATCAAATCTAAATTCTGGAAGAAA 1767
Query 1618 CACGATTCGAAGTATTCAGCATCGAGAATGTCCACTTATAGGAACAGAAATGCAGAAACC 1677
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 CACGATTCCAAGTATTCAGCATCGAGAATGTCCACTTATAGGAACAGAAATGCAGAAACC 1827
Query 1678 ACAGGGATACAAAACTCGAGGCATCGGTTTAATGGCTCTCCTGGATTTATAGTCAACCCA 1737
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 ACCGAGATACAAAACTCGAGGCATCGGTTTAATGGCTCTCCTGGATTTATAGTCAACCCA 1887
Query 1738 TTAGCTGAAATTCGACCAGATAATGGATCTGCAGGTAAACAAGCTGTATGCCTCACAATT 1797
||||||||||||||||||||||||| |||||||||| | || ||||||||||
Sbjct 1888 TTAGCTGAAATTCGACCAGATAATG-ATCTGCAGGT---C----TG----CCTCACAATT 1935
Query 1798 GAGGGACGAAGAGAAACAAAAC 1819
||||||||| ||||||||||||
Sbjct 1936 GAGGGACGACGAGAAACAAAAC 1957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90260579910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5