BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918030
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62660.1 | Symbols: | F-box and associated interaction doma... 684 0.0
AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-... 492 5e-138
> AT5G62660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:25156326-25157465 REVERSE LENGTH=1140
Length=1140
Score = 684 bits (370), Expect = 0.0
Identities = 587/689 (85%), Gaps = 26/689 (4%)
Strand=Plus/Plus
Query 709 TCGTCTAGTA-CTGATGCAAAGTCTTTCCACCAAGATTTGACAA-TGCCAGGGATGGGAG 766
|||||||||| | | ||| ||||||| | ||| ||||||||| || ||||||||||||
Sbjct 355 TCGTCTAGTAGCAG-TGCTGAGTCTTTGGAACAAAATTTGACAATTG-CAGGGATGGGAG 412
Query 767 GACACAACATGATGATTCTTCGCGGCTTGATTCTATACATTGTTTGCAGAAAGGCGTGTA 826
||| ||||||| || ||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 413 GACGCAACATGGTGGTTCTTCGCGGCTTGATTCTATACGTTGTTTGCAGAACGGCGTCTA 472
Query 827 TCTATAATCCCACCACCAGACAATGCGTAACCTTACCCGCCGTCAAATCCAACATTTTTG 886
||||||||||||||||||||||| | ||||||||||| || |||||||||||||| |||
Sbjct 473 TCTATAATCCCACCACCAGACAAAGTGTAACCTTACCTGCTGTCAAATCCAACATCCTTG 532
Query 887 CTCAAGAAGACTATC-GTAAGAGTGTCCTCTACTTTTTAGGACACGATCCTGTTCTTGAT 945
||||| || | | | | || ||| ||||||||||||| ||| |||||||||||||||||
Sbjct 533 CTCAAAAATCCCA-CTGGAATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTTGAT 591
Query 946 CAATACAAAGTAGTTTGCACTGTTGCAGTATCCTCAAAAAGGTTTAAGAGGATAACCTCA 1005
||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 592 CAATACAAAGTAGTTTGCACTGTTGCACTATTCTCAAAAAGGCTTAAGAGGATAACCTCA 651
Query 1006 GAGCATTGGGTCTTCGTCCTAGAACCCGGAGGTTCGTGGAAAAGAATTGAGTTTGATCTA 1065
||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||| |
Sbjct 652 GAGCATTGGGTCTTCGTACTAGAACCAGGAGGTTCGTGGAAAAGAATTGAATTCGATCAA 711
Query 1066 CCTCATTGTCC-TGC-ACGACTAGGACTGTGCATCAACGGAGTCATATATTTTTTGGCTT 1123
|||||| ||| | | | |||||||| ||||| |||| ||||| ||||||| ||||||||
Sbjct 712 CCTCATC-TCCCTACGA-GACTAGGATTGTGCGTCAATGGAGTTATATATTATTTGGCTT 769
Query 1124 CCGCTTGTATGTC-TAGCGATATCCTTGTCAGTTTTGATGTTATGTCTGAAGAGTTCAA- 1181
|| |||| | | | | | |||||| ||||||||||||| ||| ||||||||||||||
Sbjct 770 CCACTTGGAAG-CGTCGTGATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGT 828
Query 1182 ATGGATCCAAGGACCTCCTGTCGCGTCTGCATTTA---AGCCCATGGGTTTTATAGAGTA 1238
||| ||||||||||||| | | |||||||||| || | |||| |||||||||||
Sbjct 829 ATG-ATCCAAGGACCTCTTAAGGTGTCTGCATTTTCTGAGTCTGTGGGATTTATAGAGTA 887
Query 1239 TCTTGGAAAACCATCTGTTTTTGATCATTCCCATCTT-AAACGCAAA-GG-TTCCGTGGA 1295
| |||||||||| ||||||||||| || || || | |||| ||| || || |||||
Sbjct 888 TGGTGGAAAACCAGCTGTTTTTGATTATACC-ATGATGAAAC--AAACGGGTTTGGTGGA 944
Query 1296 CTTATGGGTCTTGGAAGATGCTGGAAAATGGTCGAAG-AAATCCCTGGTTTTGCAGCCTT 1354
||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 945 CTTGTGGGTCTTGGAAGATGCTGGAAAATGGTC-AAGGAAATCTCTGGTTTTGCAGCCTT 1003
Query 1355 GTCAGATGCATTTAGTTGATAA-GAAATT 1382
|||||||||||||||| ||||| || |||
Sbjct 1004 GTCAGATGCATTTAGTCGATAATGACATT 1032
> AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-25096635
REVERSE LENGTH=1263
Length=1263
Score = 492 bits (266), Expect = 5e-138
Identities = 620/779 (80%), Gaps = 72/779 (9%)
Strand=Plus/Plus
Query 649 TGTAATTCAATGGAAGTCTGCTATAACCCTTGCGAGTCTGTATTGCTATCATTATCATCA 708
||| |||||| ||| |||||| | | ||| ||||||||||| |||||||| | || |||
Sbjct 313 TGTGATTCAAGGGAGGTCTGCCACAGCCCCCGCGAGTCTGTACTGCTATCA-T-TC-TCA 369
Query 709 TCGTCTAGTACTGATGCAAAGTCTTTCCACCAAGATTTGAC-A--ATGCCAGGGATGGGA 765
||| | || | | || |||| ||||||||||||| | |||| ||||||||||
Sbjct 370 TCG-C-----CT--T-C-TAG--TTTCGACCAAGATTTGACGACCATGCAAGGGATGGGA 417
Query 766 GGAC-ACAACATGATGATTCTTCGCGGCTTGATTCTATACATTGTTTGCAGAAAGGCGTG 824
|||| || | ||| ||| |||||| ||||||||| |||||||||||||| |||| |||||
Sbjct 418 GGACTAC-ATATGGTGACTCTTCGTGGCTTGATTTTATACATTGTTTGCGGAAAAGCGTG 476
Query 825 TATCTATAATCCCACCACCAGACA-ATGCGTAACCTTACCCGCCGTCAAATCCAACATTT 883
| |||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||
Sbjct 477 TCTCTATAATCCCACCACCAGACAGA-GCGTAACCTTACCCGCCATCAAATTCAACATTT 535
Query 884 TTGCT-CAA-GAAGACTATCGTAAGAGTGTCCTCTACTTTTTAGGACACGATCCTGTTCT 941
||| | ||| ||| || | | | ||| |||||||||| || || ||||||||||||||
Sbjct 536 TTG-TCCAAGGAA-ACGAAC---ATAGTCTCCTCTACTTCTTGGGGCACGATCCTGTTCT 590
Query 942 TGATCAATACAAAGTAGTTTGCACTGTTG---CAGT-ATCCTCAAAAAGGTTT--AAGAG 995
||||||||||||||||||||||||| ||| || | ||||||| || | ||| || |
Sbjct 591 TGATCAATACAAAGTAGTTTGCACTTTTGTGTCA-TCATCCTCACAA-GATTTGGAA-AC 647
Query 996 GATAACCTCAGAGCATTGGGTCTTCGTCCTAGAACCCGGAGGTTCGTGGAAAAGAATTGA 1055
||||| ||| ||||||||||||||||| || ||| |||||||| ||||||||||||||
Sbjct 648 GATAATCTCGGAGCATTGGGTCTTCGTACTGGAAGTTGGAGGTTCTTGGAAAAGAATTGA 707
Query 1056 GTTTGATCTACCTCATTGTCCTGC-ACGA-CTAGGACTGTGCATCAACGGAGTCATATAT 1113
|||||||| ||||||| |||| | | || || |||||||||||| ||||| ||||||
Sbjct 708 GTTTGATCAACCTCATACTCCTACGA-GATCT-GGACTGTGCATCGGTGGAGTTATATAT 765
Query 1114 TTT-TTGGCTTCCGCTTGTATGTCT-AGCGATATCCTTGTCAGTTTTGATGTTATGTCTG 1171
| | ||| ||| | || |||||| | || |||||| |||||| ||||| |||| |||||
Sbjct 766 TATCTTG-CTTTCACTAGTATGTTTCAG-GATATCGTTGTCACCTTTGACGTTAGGTCTG 823
Query 1172 AAGAGTTCAA-ATGGATCCAAG-GACCTCCTGTCGC-GTCTGCAT-T-TA-AGC-C-CAT 1223
|||| || || || ||||||| | |||| ||| | |||||||| | | | | | | |
Sbjct 824 AAGAATTTAACATT-ATCCAAGCG-CCTCTTGT-GTTGTCTGCATATGTTGA-CTCTC-T 878
Query 1224 GGGTTTTATAGAGTATCT-TGGAAAACCATCTGTTTTTGATCATTCCCA-TCTTAAACGC 1281
|| |||||||||||| | ||| |||||| || ||||| ||||| | | ||||||| |
Sbjct 879 GGATTTTATAGAGTA-CGGTGGGAAACCAGCTATTTTTTATCATACT-AGTCTTAAA-GA 935
Query 1282 AAA-GGTTCCGTGGACTTATGGGTCTTGGAAGATGCTGGAAAATGGTCGAAGAAA-TCCC 1339
||| |||| || |||||||||||||||||| |||||||||| ||||||| || | |
Sbjct 936 AAACGGTTTGGTAGACTTATGGGTCTTGGAAAATGCTGGAAACTGGTCGAGGACAGTTT- 994
Query 1340 TG-GTTTTGCAGCCTTGTCAGATGCATTTAGTTGATAA-GAAATTATCATTCACGGTTA 1396
|| |||| ||||||||||||| |||||||||||||||| || ||| |||| ||| |||
Sbjct 995 TGAGTTT-GCAGCCTTGTCAGCTGCATTTAGTTGATAACGACATTC-CATTGACG-TTA 1050
Score = 69.4 bits (37), Expect = 9e-11
Identities = 51/57 (89%), Gaps = 3/57 (5%)
Strand=Plus/Plus
Query 175 GCTCTGATTTCATCTTTTCAATGGAAGAAAAAGTCGTCAAAGGC-A--ATGAGAAGA 228
||||||||||||||||||||||||||||| | ||| |||||||| | |||||||||
Sbjct 16 GCTCTGATTTCATCTTTTCAATGGAAGAAGAGGTCTTCAAAGGCGATTATGAGAAGA 72
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5