BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918053 Length=558 Score E Sequences producing significant alignments: (Bits) Value AT4G02910.1 | Symbols: | unknown protein; Has 5 Blast hits to ... 198 4e-50 > AT4G02910.1 | Symbols: | unknown protein; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:1288486-1289615 REVERSE LENGTH=381 Length=381 Score = 198 bits (107), Expect = 4e-50 Identities = 145/163 (89%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 1 ATGAATCTACTGGCTTTCGTCATCGGTGATAAAGGGGTTGGTAAATCATCATTGGTAACG 60 |||||| || ||| |||||||||||| ||| |||||||| |||||||||||||||||||| Sbjct 1 ATGAATATATTGGTTTTCGTCATCGGCGATGAAGGGGTTTGTAAATCATCATTGGTAACG 60 Query 61 AAGTTTGCCG-ATGATAATAG-CCCAAGGGCTACGTATGACAGGATTTCTTTGGAGCATA 118 ||||||| || |||||||| | |||||| |||||||||||||||| | || || ||||| Sbjct 61 AAGTTTG-CGAATGATAAT-GACCCAAGAGCTACGTATGACAGGAATCCTAGGGGGCATA 118 Query 119 AGATAGAAATTGACATTGATGGTCGAAAATGGATGTTGAAGAT 161 ||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 119 AGATAGAAATTGACATTGATGGTCGAAGATGGATGTTTAAGAT 161 Score = 99.0 bits (53), Expect = 4e-20 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 32 AAGGGGTTGGTAAATCATCATTGGTAACGAAGTTTGCCGATGATAATAGCCCAAGGGCTA 91 ||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |||| Sbjct 227 AAGGGGTTGGTAAATCATCATTGGTAACGAAATTTGCCGAGGATAATGGCCCAATGGCTG 286 Query 92 CGTATGACAGGATTTCT 108 | ||||||| || |||| Sbjct 287 CATATGACATGAATTCT 303 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26774800351 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5