BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918053

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02910.1 | Symbols:  | unknown protein; Has 5 Blast hits to ...   198    4e-50


> AT4G02910.1 | Symbols:  | unknown protein; Has 5 Blast hits to 
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr4:1288486-1289615 REVERSE LENGTH=381
Length=381

 Score =  198 bits (107),  Expect = 4e-50
 Identities = 145/163 (89%), Gaps = 4/163 (2%)
 Strand=Plus/Plus

Query  1    ATGAATCTACTGGCTTTCGTCATCGGTGATAAAGGGGTTGGTAAATCATCATTGGTAACG  60
            |||||| || ||| |||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct  1    ATGAATATATTGGTTTTCGTCATCGGCGATGAAGGGGTTTGTAAATCATCATTGGTAACG  60

Query  61   AAGTTTGCCG-ATGATAATAG-CCCAAGGGCTACGTATGACAGGATTTCTTTGGAGCATA  118
            ||||||| || |||||||| | |||||| |||||||||||||||| | ||  || |||||
Sbjct  61   AAGTTTG-CGAATGATAAT-GACCCAAGAGCTACGTATGACAGGAATCCTAGGGGGCATA  118

Query  119  AGATAGAAATTGACATTGATGGTCGAAAATGGATGTTGAAGAT  161
            ||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  119  AGATAGAAATTGACATTGATGGTCGAAGATGGATGTTTAAGAT  161


 Score = 99.0 bits (53),  Expect = 4e-20
 Identities = 69/77 (90%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  32   AAGGGGTTGGTAAATCATCATTGGTAACGAAGTTTGCCGATGATAATAGCCCAAGGGCTA  91
            ||||||||||||||||||||||||||||||| |||||||| |||||| |||||| |||| 
Sbjct  227  AAGGGGTTGGTAAATCATCATTGGTAACGAAATTTGCCGAGGATAATGGCCCAATGGCTG  286

Query  92   CGTATGACAGGATTTCT  108
            | ||||||| || ||||
Sbjct  287  CATATGACATGAATTCT  303



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26774800351


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5