BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918055
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26990.1 | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome ... 512 3e-144
> AT2G26990.1 | Symbols: FUS12, ATCSN2, COP12, CSN2 | proteasome
family protein | chr2:11519507-11522587 REVERSE LENGTH=1672
Length=1672
Score = 512 bits (277), Expect = 3e-144
Identities = 876/1151 (76%), Gaps = 97/1151 (8%)
Strand=Plus/Plus
Query 109 GAGACTGAACCTGAA-ACTGCACTTTCTGGGTTTGCTGATGTTGTTAAGAT-GAGCC-GA 165
||||||||||||||| | ||||||||||| |||||||| |||||| |||| || || ||
Sbjct 287 GAGACTGAACCTGAAGA-AGCACTTTCTGGATTTGCTGAGGTTGTTCAGATGGAACCTGA 345
Query 166 -AACCATGATAACTGGTGTCTCATAGCTCTTGAGCGGACTGTGCAGATTTATTGTAGTCG 224
|| | | | ||||| || ||| ||||||| ||| ||||||| |||| |||| | |||
Sbjct 346 GAA--A-GCTGACTGGGGTTTCAAAGCTCTTAAGCAGACTGTGAAGATCTATTATCGTCT 402
Query 225 GGGTGAACACGAAA-AAATTAAGGATGTGC-ATAGAGAGATGCTTA-AGTTTACCAAGT- 280
||| || || ||| |||| | ||| | | ||| ||||||||||| | | || |||||
Sbjct 403 AGGTAAATAC-AAAGAAATGATGGAAG-CCTATACAGAGATGCTTACA-TATATCAAGTC 459
Query 281 --C--TC-CCTA-CTTTTA-TTC-----TTCCATAACCAGTATTACAGACTTCGTCTCTA 328
| || || | ||| | | |||| || ||| | || |||||||||
Sbjct 460 AGCAGTCACC-AGGAATTACAGCGAAAAATGTATAAACAATATCATGGATTTCGTCTCTG 518
Query 329 GCTCTTTTAGCGACAACTTTGACCTGCTGGAAGAGTTTTATCAGACCACCTTGCAAA-CC 387
| ||| |||| | ||| || ||||||| ||||||| ||||||||||| ||| ||| ||
Sbjct 519 GATCTGCTAGCCAGAACACTGGCCTGCTGCAAGAGTTCTATCAGACCACTTTG-AAAGCC 577
Query 388 CTCGAAGAGAG-TAAGGGAAGCTCTCAG-GCACTCTGGTTCAAAACGAATCTGAAACTCT 445
|| |||||| | ||| ||| | || | |||||||||||| || ||||| |||||||
Sbjct 578 CTTGAAGAG-GCTAA--GAA----TGAGAG-ACTCTGGTTCAAGACAAATCTTAAACTCT 629
Query 446 GCAACACCTTGTTTGACCTTCGTAAATACCCACAAATTAGTAAGATCCTCAAGGAACTCC 505
|||||| || ||||||| || || ||||| || || | |||||| || ||||||||||
Sbjct 630 GCAACATCTGGTTTGACATTGGTGAATACAGACGGATGACTAAGATTCTGAAGGAACTCC 689
Query 506 ATAAATATTGTCAGAATGAAGATGGCACAT-ATGCTAAGAACAAAGGAAGTCAGGTGTTT 564
|||| | |||||| || |||||||| || | ||| | |||| |||||||||||| || ||
Sbjct 690 ATAAGTCTTGTCAAAAGGAAGATGGAAC-TGATGATCAGAAGAAAGGAAGTCAGCTGCTT 748
Query 565 GAGGTTTTTGCAAATGAATTTCTGCTCTACATTGAAACAAATGATAACAAAGATCTTAAG 624
||||||| ||||| |||| ||| | | |||| |||||| || || |||||| | ||| |
Sbjct 749 GAGGTTTATGCAATTGAAATTCAGATTTACACTGAAACGAAGGACAACAAAAAGCTT-A- 806
Query 625 ATGCAACAACTGTACCAGAAGGCATTTTCCGGCAAAT-T-CGATACAAGTGATCATACGG 682
| | ||||| ||||| |||||| || || ||| | | | |||| | ||| || ||
Sbjct 807 A-G---CAACTATACCATAAGGCACTTGCCATCAAGTCTGCCATAC--CTCATCCTA-GG 859
Query 683 -TCATTGGTATAGTACGCGAATGTGGTGGAAAAATGCACATGGCAGAACGTCAGTGGGAA 741
|||| |||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 860 ATCATGGGTATAATCCGCGAGTGTGGTGGAAAAATGCACATGGCAGAACGTCAGTGGGAA 919
Query 742 GAAGCTGCCATTGACTTCCGTGCGGCTTTTGCAAACTATAATTTAGCTCGTAACCAGAGA 801
||||| || | |||||| || ||||||| ||| || || |||| | ||||| |||
Sbjct 920 GAAGCAGCGACAGACTTCTTTGAGGCTTTTAAAAATTACGATGAAGCTGGCAACCAAAGA 979
Query 802 CGTATAAAGTGCCTAAAGTATGGTCTTCTGGCGAATATGATG--GG-GTC-GAAAGTGAA 857
|||||| ||||||| |||||| | |||||||||||||| || || ||| ||| |||||
Sbjct 980 CGTATACAGTGCCTGAAGTATCTTGTTCTGGCGAATATGCTGATGGAGTCAGAA-GTGAA 1038
Query 858 TCCATTTGACCGGG-A-GACTGCAAGGCGGTACGAAAACAACCCTGAGATCTTGGCAATG 915
||| ||||| || | || |||| || |||| ||||| |||||||||| |||||||||
Sbjct 1039 TCCGTTTGAT-GGCCAAGAG-GCAAAGCCGTACAAAAACGACCCTGAGATTTTGGCAATG 1096
Query 916 A-AAGCTTTGATAGAAGCTTATGaaaaaaaTGATTTTGCAGAGTTTCAGAGAATATTAAA 974
| || |||||| | ||| ||| || |||||| | ||||||| |||||||| ||||
Sbjct 1097 ACAAA-TTTGATCGCAGCATATCAACGAAATGAGATCATAGAGTTTGAGAGAATACTAAA 1155
Query 975 G--T--CC--A------T---GGATGATCCATTTATCAAAACCTACTACATGGAAGATCT 1019
| | || | | |||||||||||| |||| || ||||||||||||||||
Sbjct 1156 GAGTAACCGGAGGACGATAATGGATGATCCATTCATCAGAA---ACTACATGGAAGATCT 1212
Query 1020 AGATATGTTAAAGAAGGTGAGAACACAAGTGTTACTGAACCTGATAAAGCCATATGCAAA 1079
| | | || ||| ||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1213 -GCT--G--AA-GAAAGTGAGAACACAAGTGTTACTGAAGCTGATTAAGCCATACACAAA 1266
Query 1080 TATAGGGATTCAGTTCATATCAACGAAACT-AGGCATGTCAGAGACAGAAGTTACGGAGT 1138
|||||||||| ||||||||||| | |||| | | || ||||||| || || |||||||
Sbjct 1267 GATAGGGATTCCGTTCATATCAAAGGAACTGAA-CGTGCCAGAGACGGATGTGACGGAGT 1325
Query 1139 TGCTGAG-GTCGCTGATACTCGACAGTCA-AATCGATGGGTCT-ATTGATGGAGTGAACG 1195
| || || |||||||||||||||||| || ||||||||| || ||||||| | |||||
Sbjct 1326 TACT-AGTGTCGCTGATACTCGACAG-CAGAATCGATGG-TCACATTGATGAAATGAACC 1382
Query 1196 GTTACTTGCTG 1206
||||||| |||
Sbjct 1383 GTTACTTACTG 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5