BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918087
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63085.1 | Symbols: | Plant thionin family protein | chr5:2... 235 1e-61
AT5G63063.1 | Symbols: | Plant thionin family protein | chr5:2... 102 1e-21
AT5G63087.1 | Symbols: | Plant thionin family protein | chr5:2... 89.8 1e-17
> AT5G63085.1 | Symbols: | Plant thionin family protein | chr5:25302814-25303315
FORWARD LENGTH=379
Length=379
Score = 235 bits (127), Expect = 1e-61
Identities = 216/256 (84%), Gaps = 17/256 (7%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAAATGGAGTGTGGTGATGATGATGTTGGTTTTGGTGGTGATGGCTGCCATT 60
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 49 ATGGATAAAAAATGGAGTGTGGTGATGATGATGTTCGTTTTGGTAGTGATGGCTGCCAGT 108
Query 61 GGAGGAGAAGCAGTA-GATCATTTATGTACATTCAAATGTGAAATCACTTGCCGCGATCC 119
||||||||||||| | | ||| | ||||||||| ||||||||| |||||||| |||| |
Sbjct 109 GGAGGAGAAGCAGCAAG-TCACTCATGTACATTAAAATGTGAACTCACTTGCAGCGA-CT 166
Query 120 GG-AGTTCATTACACCTTGCTTCAAAAAGTGTATGGCTGAATGCCAGCATCGTCCTCCAT 178
|| |||||| |||||||| |||||| |||||||||| | |||| |||||| ||| ||
Sbjct 167 GGGAGTTCAAAACACCTTGTTTCAAACAGTGTATGGCCGCATGCGAGCATCATCC---AT 223
Query 179 CTACAAGTAC-CCTTCACTCAATT---TC-ACAGTCGCAGATGAAGACTAAAGCGATGGA 233
|||||||||| ||||| ||||| || |||||||||||| | ||||| |||||||
Sbjct 224 CTACAAGTACTCCTTCT-TCAATGAAATCCACAGTCGCAGAT-A---CTAAACCGATGGA 278
Query 234 AGAAACGAGAGGGTAG 249
||||| ||||||||||
Sbjct 279 AGAAATGAGAGGGTAG 294
> AT5G63063.1 | Symbols: | Plant thionin family protein | chr5:25297420-25297650
FORWARD LENGTH=231
Length=231
Score = 102 bits (55), Expect = 1e-21
Identities = 97/116 (84%), Gaps = 7/116 (6%)
Strand=Plus/Plus
Query 1 ATGGAGAAAAAATGGAGTGTGGTGATGATGATG---TTGGTTTTGGTGGTGATGGCTGCC 57
||||||| ||||||||||||||||||||| || || ||||| |||||||||||||||
Sbjct 1 ATGGAGAGCAAATGGAGTGTGGTGATGATGGTGTACTTAGTTTTTGTGGTGATGGCTGCC 60
Query 58 ATTGGAGGAGAAGCAGTAGATCATTT-ATGT-ACATTCAAATGTGAAATCACTTGC 111
||||||||||||||| ||||| ||| |||| | | ||||||| |||||| |||
Sbjct 61 ATTGGAGGAGAAGCACAAGATC-TTTCATGTGAAACG-AAATGTGCAATCACCTGC 114
> AT5G63087.1 | Symbols: | Plant thionin family protein | chr5:25304803-25305198
FORWARD LENGTH=298
Length=298
Score = 89.8 bits (48), Expect = 1e-17
Identities = 79/92 (86%), Gaps = 10/92 (11%)
Strand=Plus/Plus
Query 1 ATGGAGAA-AA--AATGGAGTGTGGTGATGATGATGTTGGTTTTGGTGGTGATGGCTGCC 57
|||||||| || | | |||||| || ||||||| ||||||||||||||||||||||||
Sbjct 53 ATGGAGAACAAGTACTCGAGTGT--TG-TGATGATTTTGGTTTTGGTGGTGATGGCTGCC 109
Query 58 ATTGGAGGAGAAGCAGT-AGATCATTT-ATGT 87
||||||||||||||| | ||||| ||| ||||
Sbjct 110 ATTGGAGGAGAAGCA-TCAGATC-TTTCATGT 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11310243525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5