BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918094
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63130.1 | Symbols: | Octicosapeptide/Phox/Bem1p family pro... 800 0.0
> AT5G63130.1 | Symbols: | Octicosapeptide/Phox/Bem1p family protein
| chr5:25323102-25324272 FORWARD LENGTH=1082
Length=1082
Score = 800 bits (433), Expect = 0.0
Identities = 534/582 (92%), Gaps = 9/582 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGCCGTTGATTATACGGAGAAGAATAGTGGAAGCAGTCTCAAGTTTCTATGCAGT 60
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 89 ATGGTAGCCGTTGATTATACCGAGAAGAACAGTGGAAGCAGTCTCAAGTTTCTATGCAGT 148
Query 61 TACGGTGGTAGAATCTTCCCTCGTTCCACCGATGGCAAGCTCCGTTACGTCGGAGGTCAC 120
|||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 149 TACGGTGGCAGAATCCTCCCTCGCTCCACCGACGGCAAGCTCCGTTACGTCGGAGGTCAC 208
Query 121 ACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTTTCTCAGAGCTGATGAAGAAACTCTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 ACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTTTCTCAGAGCTGATGAAGAAACTCTAT 268
Query 181 GAATTCTGTGGATACTCCGTTGAACTACGATGTCAATTACCAAACGGAGATCTCGAGACT 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 269 GAATTCTGTGGATACTCCGTTGATTTACGATGTCAATTACCAAACGGAGATCTCGAGACT 328
Query 241 CTAATCTCCGTCAAATCAGAAGAAGAACTAGCGAACATCGTCGAAGAGTACGATCGCATA 300
||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||
Sbjct 329 CTAATCTCCGTCAAATCAGAAGAAGAACTAGCGGAGATCGTTGAAGAGTACGATCGCATC 388
Query 301 TCCGGAGCTAAGATCAGAGCCGTTCTATCGCCTCCGAGATCTTCGCATAAGAACGATTCG 360
| |||||| |||||| | ||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 389 TGCGGAGCCAAGATCCGTGCCGTTCTATCACCTCCGAGATCTTCGCATAAGACCGAATCT 448
Query 361 TCGCCGTCTTCAAGCGGCGATCGATCTCCGAAATCTCCATTCTCCATCACGCCTTCACCG 420
||||||||||||||||| ||||||||||| ||||| || |||||| ||||||||||||||
Sbjct 449 TCGCCGTCTTCAAGCGGTGATCGATCTCCAAAATCGCCGTTCTCCGTCACGCCTTCACCG 508
Query 421 CCGAATTCTCCGTCGCCGGCGTACGGACGATATCTACAATCTCGGTATTGT---CCAGC- 476
|| |||||||||||||||||||| ||| ||||||||||||||||||||||| || |
Sbjct 509 CCAAATTCTCCGTCGCCGGCGTATGGAAGATATCTACAATCTCGGTATTGTTTACCTTCC 568
Query 477 --GGATCTTGTTCCTAGAAGATACAATCATAGATCGGAAGAATCTCATTGCTGCTATGCG 534
||||||| ||| |||||||||| ||| ||| |||||||||| |||||||||||||||
Sbjct 569 ACGGATCTTCCTCCGAGAAGATACATTCAGAGAGCGGAAGAATCGCATTGCTGCTATGCG 628
Query 535 TGTCGTGTACACAACAAAGACTCTAGGCTCGTATGGCATTGA 576
|||||||||||||| | |||||||||||||| |||||||||
Sbjct 629 TGTCGTGTACACAA-A--GACTCTAGGCTCGTTTGGCATTGA 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27679014997
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5