BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918108 Length=243 Score E Sequences producing significant alignments: (Bits) Value AT5G63270.1 | Symbols: | RPM1-interacting protein 4 (RIN4) fam... 405 9e-113 > AT5G63270.1 | Symbols: | RPM1-interacting protein 4 (RIN4) family protein | chr5:25365498-25365949 REVERSE LENGTH=243 Length=243 Score = 405 bits (219), Expect = 9e-113 Identities = 236/244 (97%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 1 ATGGCGGGAAACAAAGGGAAGCCATTGCCAAAGTTTGGGGAATGGGATGTGAACAATCCC 60 ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCGGAAAACAAAGGGAAACCATTGCCAAAGTTTGGGGAATGGGATGTGAACAATCCG 60 Query 61 GCATCAGCCGAAGGATTCACAGTCATTTTCAGCAAAGCTAGTGACGAGAAGAAGACCAAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCATCAGCCGAAGGATTCACAGTCATTTTCAGCAAAGCTAGTGACGAGAAGAAGACCAAG 120 Query 121 AAAGCATCCGGCGCTGGCCCTAATAGTCTGGTTTCACCTCAGGGAAACCAAAACTCCGAT 180 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 AAAGCATCCGGCGCTGGCCCTAATAGTCTGGTTTCACCTCAGAGAAACCAAAACTCCGAT 180 Query 181 CAAAACAATCACCAT-GATTCCCAAAACCCAAAAGCTAAGAACAAATGGTTTTGCTTCCG 239 ||||||||| ||||| | |||||||||||| ||||||||||||||||||||||||||||| Sbjct 181 CAAAACAATAACCATAG-TTCCCAAAACCCTAAAGCTAAGAACAAATGGTTTTGCTTCCG 239 Query 240 TTAA 243 |||| Sbjct 240 TTAA 243 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11008637031 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5