BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918108
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63270.1 | Symbols: | RPM1-interacting protein 4 (RIN4) fam... 405 9e-113
> AT5G63270.1 | Symbols: | RPM1-interacting protein 4 (RIN4) family
protein | chr5:25365498-25365949 REVERSE LENGTH=243
Length=243
Score = 405 bits (219), Expect = 9e-113
Identities = 236/244 (97%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGGAAACAAAGGGAAGCCATTGCCAAAGTTTGGGGAATGGGATGTGAACAATCCC 60
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAAAACAAAGGGAAACCATTGCCAAAGTTTGGGGAATGGGATGTGAACAATCCG 60
Query 61 GCATCAGCCGAAGGATTCACAGTCATTTTCAGCAAAGCTAGTGACGAGAAGAAGACCAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCATCAGCCGAAGGATTCACAGTCATTTTCAGCAAAGCTAGTGACGAGAAGAAGACCAAG 120
Query 121 AAAGCATCCGGCGCTGGCCCTAATAGTCTGGTTTCACCTCAGGGAAACCAAAACTCCGAT 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 AAAGCATCCGGCGCTGGCCCTAATAGTCTGGTTTCACCTCAGAGAAACCAAAACTCCGAT 180
Query 181 CAAAACAATCACCAT-GATTCCCAAAACCCAAAAGCTAAGAACAAATGGTTTTGCTTCCG 239
||||||||| ||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 CAAAACAATAACCATAG-TTCCCAAAACCCTAAAGCTAAGAACAAATGGTTTTGCTTCCG 239
Query 240 TTAA 243
||||
Sbjct 240 TTAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11008637031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5