BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918141
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63600.2 | Symbols: FLS5, ATFLS5 | flavonol synthase 5 | chr... 909 0.0
AT5G08640.1 | Symbols: FLS, ATFLS1, FLS1 | flavonol synthase 1 ... 270 2e-71
> AT5G63600.2 | Symbols: FLS5, ATFLS5 | flavonol synthase 5 | chr5:25460684-25462458
REVERSE LENGTH=1567
Length=1567
Score = 909 bits (492), Expect = 0.0
Identities = 769/899 (86%), Gaps = 33/899 (4%)
Strand=Plus/Plus
Query 155 TTCCCGTCGTTGATCTAAGCGCTTCTGACGAAGAGC-TCGTGGTGCGTGCGGTGGTGAAA 213
||||||||||||||||||||| |||||| ||||| | || ||||||||| ||||||||||
Sbjct 286 TTCCCGTCGTTGATCTAAGCGTTTCTGATGAAGA-CTTCTTGGTGCGTGAGGTGGTGAAA 344
Query 214 GCGAGTGAAGAATGGGGAATTTTTCAGGTGGTTAACCACGGAATTCCCACTGAGCTGATG 273
||||||||||| |||||| ||||||||||||||||||| || ||||| || |||||||||
Sbjct 345 GCGAGTGAAGAGTGGGGAGTTTTTCAGGTGGTTAACCATGGGATTCCAACCGAGCTGATG 404
Query 274 CAGCAGCTGCAAGTGGTTGGGAAACAGTTTTTCGACCTCCCAGAGGCGGAAAAAGAAGCT 333
| |||||||||| ||||||| | ||||||||||| ||||| || || ||||| ||| |
Sbjct 405 CGGCAGCTGCAAATGGTTGGTACGCAGTTTTTCGAGCTCCCGGATGCTGAAAAGGAAACC 464
Query 334 GTGGCGAAAGAGGAAGACTTTGAAGGATACAAGAGGAACTATCTTGAAGGTATAAAGGCT 393
|||||||||||||||||||| ||||||||||||| ||| ||||| | ||||||||| |
Sbjct 465 GTGGCGAAAGAGGAAGACTTCGAAGGATACAAGAAGAATTATCTAGGAGGTATAAACAAT 524
Query 394 TGGGACGAACATCTGTTTCATAGAATCTGGCCACCCTC-ATGCATTAATTATAAATATTG 452
|||||||||||||| ||||| ||| ||| |||||||| || || ||||||||||||||
Sbjct 525 TGGGACGAACATCTCTTTCACAGACTCTCTCCACCCTCAAT-TATCAATTATAAATATTG 583
Query 453 GTCTAAGAATCCTCCTCGATATAGGGAAGTGAATGAGGAATATACAAGGCATATGAAGAA 512
| ||||||||||||||| ||||||||| |||| ||||| ||||||| |||||||||||
Sbjct 584 GCCTAAGAATCCTCCTCAATATAGGGAGGTGACGGAGGAGTATACAAAGCATATGAAGAG 643
Query 513 GCTAACAGAGAAAATTCTTGGTTGGTTATCAGAGGGACTAGGGTTACCA-CCTGCAG-CG 570
|||||| ||||| |||||||||||||||||||||||| |||||||| || | || || ||
Sbjct 644 GCTAACGGAGAAGATTCTTGGTTGGTTATCAGAGGGATTAGGGTTA-CAGCGTG-AGACG 701
Query 571 TTGACGAAAAGTTTAGGTGGCGAAATGGCAGAGTATGTGATTAGGGTCAATTTCTATCCG 630
|| ||| ||||| ||||||| || | ||||||||||||| ||||||||||||||||||||
Sbjct 702 TTCACGCAAAGTATAGGTGGTGACACGGCAGAGTATGTGCTTAGGGTCAATTTCTATCCG 761
Query 631 CCGTCTCCAAAAT-CGGAATTAGCCTTAGGAGCCGCCGTGCACACCGATATAGGTGCAAT 689
|| || ||| || ||||||||| | |||||||||| | ||||| |||||| ||||||||
Sbjct 762 CCAACT-CAAGATACGGAATTAGTCATAGGAGCCGCGGCGCACAGCGATATGGGTGCAAT 820
Query 690 CACACTTCT-AGTCCCCAATGAGGTTCCTGGACTTCAAGTCTTCAAGGACGAACAATGGT 748
| |||| || | |||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 821 CGCACTCCTCA-TCCCAAATGAGGTTCCTGGACTTCAAGCCTTCAAGGACGAACAATGGT 879
Query 749 TGGATCTTGAGTATATCAACTCCGCTGTGGTTGTTATCATTGGCGATCAACTCATG--A- 805
|||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||| |
Sbjct 880 TGGACCTTGACTATATCGACTCCGCCGTGGTTGTTATCATTGGCGATCAACTCATGGTAT 939
Query 806 GGATGAGCAACGGGAGGTACAAA-AACGTACTTCATAGAGC-AACAT-TGGATAAGGA-A 861
|||||| ||||||||||| ||| ||||| ||||| ||||| || | || ||||||| |
Sbjct 940 GGATGACCAACGGGAGGTT-AAAGAACGTTCTTCACAGAGCGAAG-TCTG-ATAAGGACA 996
Query 862 AATTTGAGGATTT-TGTGGCCGGTTTTTGTTGCGCCTAAG-CATGATTTGTTCGTCGGAC 919
|||| |||||||| | ||||| ||||||||||| |||| | | |||| ||| ||||||||
Sbjct 997 AATT-GAGGATTTCT-TGGCCTGTTTTTGTTGCACCTAGGGC-TGATATGTCCGTCGGAC 1053
Query 920 CTTTGCCGGAGCTTACTGGAGACGAGAATCCTCCCAAATTCGAAACTATAGTTTATAAAT 979
||||||||||| |||| |||||||||||||||||||||||||| ||| || | ||||| |
Sbjct 1054 CTTTGCCGGAGTTTACCGGAGACGAGAATCCTCCCAAATTCGAGACTTTAATATATAA-T 1112
Query 980 -ACTAT-TTGCACCAGACGATTAGAAACTGGACGCTCGACA-AGCTTCCTCTCTATTGA 1035
||||| ||| |||||| ||| ||| |||| ||||||| | | |||||| |||| |||
Sbjct 1113 GACTATATTG-ACCAGAAGATAAGAGGCTGGGCGCTCGA-AGATCTTCCTGTCTACTGA 1169
> AT5G08640.1 | Symbols: FLS, ATFLS1, FLS1 | flavonol synthase
1 | chr5:2803958-2805447 FORWARD LENGTH=1334
Length=1334
Score = 270 bits (146), Expect = 2e-71
Identities = 627/849 (74%), Gaps = 73/849 (9%)
Strand=Plus/Plus
Query 154 ATTCCCGTCGTTGATCTAAGCGCTTCTGACGAAGAGCTCGTG-GTGCGTGCGGTGGTGAA 212
||||||||||| |||||||||| | | |||||||| |||| | ||| |||||||||||
Sbjct 178 ATTCCCGTCGTCGATCTAAGCGATCCCGACGAAGAAAGCGTGAG-GCGCGCGGTGGTGAA 236
Query 213 AGCGAGTGAAGAATGGGGAATTTTTCAGGTGGTTAACCACGGAATTCCCACTGAGCTGAT 272
|||||||||||||||||| | || || |||||||||||||| ||||| || ||||||||
Sbjct 237 AGCGAGTGAAGAATGGGGGCTATTCCAAGTGGTTAACCACGGGATTCCGACGGAGCTGAT 296
Query 273 GC-AGCAGCTG-CAAGTGGTTGG--GAAACAGTTTTTCGACCTCCCAGAGGCGGAAAAAG 328
| | | | | |||| || || |||| | || ||||| || || | |||| ||||
Sbjct 297 ACGA-C-GTTTACAAGACGTCGGAAGAAA-A-TTCTTCGAGCTTCCTTCGTCGGAGAAAG 352
Query 329 AAGCTGTGGCGAAA--G-A-G----GAA-GACTTTGAAGGATAC--AAGA--G-----GA 370
|| | || || ||| | | | ||| ||| ||||||||||| || | | ||
Sbjct 353 AATCCGTCGCTAAACCGGAAGATTCGAAAGACATTGAAGGATACGGAACAAAGCTTCAGA 412
Query 371 ACTATCTTGAAGGTATAAAGGCTTGGGACGAACATCTGTTTCATAGAATCTGGCCACCCT 430
| ||| ||||||| ||| ||||||| ||| ||||| || ||| ||||||||||||| |
Sbjct 413 AAGATCCAGAAGGTAAAAAAGCTTGGGTCGATCATCTCTTCCATCGAATCTGGCCACCGT 472
Query 431 CATGCATTAATTATAAATAT-TGGTCTAAGAATCCTCCTCGA-TATAGGGAAGTGAATGA 488
||||| | ||||| | || | ||| |||||||||| ||| || || ||||| ||||||||
Sbjct 473 CATGCGTCAATTACAGAT-TCTGGCCTAAGAATCCACCT-GAATACAGGGAGGTGAATGA 530
Query 489 GGAATATACAAG-GCATATGAAGAAGCTAACAGAGAAAATTCTTGGTTGG-TTATCA-G- 544
|| ||| || | |||| ||||||||||| | |||| || || | || || || |
Sbjct 531 AGAGTATGCA-GTGCATGTGAAGAAGCTATCGGAGACG-TTATTAG--GGATTCTCTCGG 586
Query 545 AGGGACTAGGGTTACCACC-TGCA-GCGTTGACGAA-AAGTT-TAGGTGGCGAAATGGCA 600
| ||| |||||||| | | || | ||||||| || ||| | | || || || |||||
Sbjct 587 ATGGATTAGGGTTAA-AGCGTG-ATGCGTTGA--AAGAAGGTCTCGGCGGAGAGATGGCG 642
Query 601 GAGTATGTGATTAGGGTCAATT-TCTATCCGCCGTCTCCAAAATCGGAATTAGCCTTAGG 659
|||||| |||| | | | || | | |||||||||| ||| |||| ||||| |||||
Sbjct 643 GAGTATATGATGAAGATTAACTAT-TATCCGCCGTGTCCTCGGCCGGATTTAGCTTTAGG 701
Query 660 AG--CCGCCGTGCACACCGATAT-AGGTGCAATCACACTTCTAGTCCCCAATGAGGTTCC 716
| ||| | | || || ||| | || || |||||| ||||| || || || || |||||
Sbjct 702 TGTACCGGC-T-CATACAGATCTCAG-TGGAATCACTCTTCTTGTTCCTAACGAAGTTCC 758
Query 717 TGGACTTCAAGTCTTCAAGGACGAACAATGGTTGGAT-CTTGAGTATAT-CAACTCCGCT 774
|||||||||||| ||||| || || || ||||| ||| | |||||||| | ||||||
Sbjct 759 TGGACTTCAAGTTTTCAAAGATGATCACTGGTTCGATGCA-GAGTATATTCC-CTCCGCC 816
Query 775 GTGGTTGTT-ATCATTGGCGATCA-ACTCATGAGGATGAGCAACGGGAGGTACAAAAACG 832
|| ||||| | ||| |||||||| | || ||||| |||| || |||||||| ||||| |
Sbjct 817 GTCATTGTTCA-CATCGGCGATCAGATTC-TGAGGTTGAGTAATGGGAGGTATAAAAATG 874
Query 833 TACTT-CATAG-AGCAACATTGGATAAGGAAAATTTGAGGATTTTGTGGCCGGTTTTTGT 890
| || ||||| | | || ||||||| || || |||||| | |||||||||||| |
Sbjct 875 TG-TTGCATAGGA-CGACGGTGGATAAAGAGAAGACGAGGATGTCGTGGCCGGTTTTC-T 931
Query 891 TGC-GCCTAAGCATGATTTG-TTCGTCGGACCTTTGCCGGAGCTTACTGGAGACGAGAAT 948
|| |||| | ||| | || || |||||||| ||||| || || ||||| || |||
Sbjct 932 TGGAGCCTCCCCGTGAAAAGATT-GTTGGACCTTTACCGGAACTAACCGGAGATGATAAT 990
Query 949 CCTCCCAAA 957
||||| |||
Sbjct 991 CCTCC-AAA 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5