BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918145
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosp... 3382 0.0
AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosp... 1373 0.0
AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicas... 1282 0.0
> AT5G63630.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:25472598-25476511
REVERSE LENGTH=2476
Length=2476
Score = 3382 bits (1831), Expect = 0.0
Identities = 2063/2172 (95%), Gaps = 27/2172 (1%)
Strand=Plus/Plus
Query 1 ATGCCTTTGAAGTTCCTTCTCCGAATACGATTCTTCACTCACTCTCTTCCGGGTACTCAT 60
||||||||||| |||| ||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 326 ATGCCTTTGAATTTCCCTCTCCGAATACGATTCTTCGCTCACTCTCTTTCGGGTACACAT 385
Query 61 CTCTCTTATAATCCCTCTAGCTCCGTCCCTTTGCTCTTCCGGATATTCTCTTCTAGG-TT 119
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 386 CTCTCTTATAATACCTCTAGCTCCGTCCCTTTGCTCTTCCGGATATTCTCTTCT-GGATT 444
Query 120 GAATCACTTTGAATTCGGGTCTCGCATCAACTTCTCAACCCGTCCGAACAGAGACCAACC 179
||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 445 GAATCACTTTGAATTTGGGTCTCGCATAAACTTCTCAACCCGTCCTAACAGAGATCAACC 504
Query 180 CGAATTTGAGCGGCGGATTCGAGATGGAGGAGAAATTCGCGCGTCAAAGAGCTTGATCGA 239
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 505 AGAATTTGAGCGGCGGATTCGAGACGGAGGAGAAATTCGCGCGTCAAAGAGCTTGATCGA 564
Query 240 AGACGAAGAAGAGCTCAGCAATTGGGTAAGCGGTTTTAGAACCGGATCTTCGCGTGGACG 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 AGACGAGGAAGAGCTCAGCAATTGGGTAAGCGGTTTTAGAACCGGATCTTCGCGTGGAAT 624
Query 300 TCTCACGAGTGAAGATGAAGATGCGGGTCCAAACGTGGAGGATCGTAGCAGAGGAAGAAT 359
||||| |||||| ||||||||| | | |||||||||||||||||||||||
Sbjct 625 TCTCAAGAGTGACGATGAAGAT----G-----A---GGAGGATCGTAGCAGAGGAAGAAA 672
Query 360 TCAAGAGAAGAGAGGAATTCGCAACCAAGTTGATTCTTTTAGGGATAAGCGTTATGATGG 419
||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||
Sbjct 673 CCAAGAGAAGAGAGGAATTCGCAACCAAGTTGATTCCTTTAGGAATAAGCGTTATGGTGG 732
Query 420 TGATAGAGAAAGGGGATTCAATAGTCGGATTCAGGGAAAGAGTAGTC-AAGCTTC-TTTT 477
||||||||||||||||||||||||||||||||| ||||||||||| | | || || |||
Sbjct 733 TGATAGAGAAAGGGGATTCAATAGTCGGATTCAAGGAAAGAGTAG-CGAGGCGTCATTTC 791
Query 478 GATGGGAGGAAAGACACAAGTTTTAGGAGAGATAGAGATAAAGAAGACTACAAGGGTTTA 537
| |||||||||||| ||||| ||| || |||||||| ||||||| | |||||||||
Sbjct 792 G-TGGGAGGAAAGAGACAAGCTTT-----AG-TAGAGATAGAGAAGACGAGAAGGGTTTA 844
Query 538 AGGAAACGGGAAGAT-AT--TCTTGAAGACGAAAGTAGTGATGAGGATGTGAAGAGTTTA 594
||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 845 AGGAAACGGGAAGATCTTCGTCTTGAAGACGAAAGTAGTGATGAGGATGTCAAGAGTTTA 904
Query 595 GTAATGGGAGGTATTGGGGATTTGCTTAGTGAAGATGATGAGGAAGAGGACCAAGATTAT 654
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 GTAATGGGAGATATTGGGGATTTGCTTAGTGAAGATGATGAGGAAGAGGACCAAGATTAT 964
Query 655 GAATTTCTTAAGAAGAAAGCGGTTTCTGCTTTTGGGTTTGATAAGGAGAAGGTTACAGAA 714
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||
Sbjct 965 GACTTTCTTAAGAAGAAAGCTGTTTCTGCTTTTGGGTTTGATAAGGAGAATGTTATAGAA 1024
Query 715 GCGGATAAGGCAAGGAATGCGAATGATTCTTATTTGACTAAGACAAGATTTGATCAGTAT 774
|||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1025 GCGGATAAAACGAGGAATGCAAATGATTCTTATTTGACTAAGACAAGATTTGATCACTAT 1084
Query 775 CCATTGTCTCCCTTATCGCTAAAAGCCATCAAGGATGCTGGATACGAGACAATGACTGTT 834
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1085 CCATTGTCTCCCTTATCGCTAAAGGCAATCAAGGATGCTGGATACGAGACAATGACTGTT 1144
Query 835 GTGCAGGAAGCTACTCTCCCTATAATTCTCAAAGGTAAAGATGTCCTAGCTAAGGCCAAA 894
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1145 GTTCAGGAAGCTACTCTCCCTATAATTCTCAAAGGCAAGGATGTCCTAGCTAAGGCCAAA 1204
Query 895 ACAGGAACTGGGAAAACTGTAGCGTTTTTGCTTCCATCAATTGAAGTAGTTGTCAAATCT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 ACAGGAACTGGGAAAACTGTAGCGTTTTTGCTTCCATCAATTGAAGTAGTTGTCAAATCT 1264
Query 955 CCTCCTACAAGCCCGGATAATAAGCGACCCCCAATTCTTGCGCTTGTGATATGCCCAACT 1014
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1265 CCTCCTACAAGCCCGGATAATAAGCGACCCCCAATCCTTGCGCTTGTGATATGCCCTACT 1324
Query 1015 AGAGAACTTGCCAATCAAGCTGCAACAGAAGCAAACACCTTGCTAAAGTATCATCCATCT 1074
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1325 AGAGAACTTGCCAATCAAGCTGCTACAGAAGCAAACACCTTGCTAAAGTATCATCCATCT 1384
Query 1075 ATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGGTTTAGAGCAAAAGCTTATGCAA 1134
|||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 1385 ATTGGTGTTCAAGTTGTGATTGGAGGTACGAGACTTGGTTTAGAGCAAAAGCGTATGCAA 1444
Query 1135 ACAAATCCTTGCCAGATTTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAAC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 ACAAATCCTTGCCAGATTTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAAC 1504
Query 1195 ACGCCAGGCTTTGCAACAAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGAT 1254
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 ACGCCAGGCTTTGCAACGAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGAT 1564
Query 1255 CATCTTTTAGACATGGGCTTTCGCAAGGACATTGAGAGGATAATTTCCGCTGTTCCTAAG 1314
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 CATCTTTTAGATATGGGCTTTCGCAAGGACATTGAGAGGATAATTTCCGCTGTTCCTAAG 1624
Query 1315 GAGAGACAAACTTTTCTATTTTCTGCCACAGTACCTGAAGAGGTTCGCCAAATATGCCTA 1374
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1625 GAGAGACAAACTTTTCTATTTTCCGCCACAGTACCTGAAGAGGTACGCCAAATATGCCTT 1684
Query 1375 GTTGCTCTGAGGCGGGATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACG 1434
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 GTTGCTCTAAGGCGGGATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACG 1744
Query 1435 CATCAACAGGTCAGACAAATGCACATGATTGCATCACTAGACAGACATTTCTCTCTTGTG 1494
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1745 CATCAACAGGTCAGACAAATGCACATGATTGCATCACTGGACAGACATTTCTCTCTTCTG 1804
Query 1495 TACACACTTCTTCGCCAACACATTATGGATAACGTAGACTATAAGGTCATTGTCTTCTGT 1554
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1805 TACACACTTCTTCGCGAACACATTATGGGTAACGTAGACTATAAGGTCATTGTCTTCTGT 1864
Query 1555 ACAACTGCCATGGTTACAAAATTAGTTGCTGATCTACTAGGTGAGATAAACTTAAATGTG 1614
||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||| |||
Sbjct 1865 ACAACGGCCATGGTTACAAAATTAGTGGCTGATCTACTTGGTGAGCTAAACTTAAACGTG 1924
Query 1615 AGAGAGATCCATTCTAGAAAACCGCAGAGTTACAGGACGAGGGTTTCTAATGAGTTCCGA 1674
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1925 AGAGAGATCCATTCTAGAAAACCGCAGAGTTACAGGACAAGGGTTTCTAACGAGTTCCGA 1984
Query 1675 AAATCCAAGGGTTTGATTCTGGTAACATCTGATGTATCTGCTCGAGGAGTCGATTACCCT 1734
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1985 AAATCCAAGGGTTTGATTCTCGTAACATCTGATGTATCTGCTCGAGGAGTTGATTACCCT 2044
Query 1735 GATGTGACCCTTGTTTTACAGGTGGGATTGCCAAAAGACAGAGAACAATATATACACAGA 1794
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2045 GATGTGACCCTTGTTTTACAGGTTGGATTGCCAAAAGACAGAGAACAATATATACACAGA 2104
Query 1795 CTTGGTAGAACGGGGAGAAAAGGAAAGGAAGGAGAAGGCCTATTGTTGTTGGCACCATGG 1854
||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2105 CTTGGTAGAACCGGGCGAAAAGGAAAGGAAGGAGAAGGCATATTGTTGTTGGCACCATGG 2164
Query 1855 GAGGAATACTTTCTATCATCTCTGAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCA 1914
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2165 GAGGAATACTTTCTATCATCTCTTAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCA 2224
Query 1915 ATAGACCCAGAAACTGTAAAAAAGGTGCAAAAGGCGCTTTGCCATGTTGAGATGAGGAAC 1974
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2225 ATAGACCCAGAAACTGTAAAAAAGGTGCAAAAGGCGCTTTGCCATGTCGAGATGAGGAAC 2284
Query 1975 AAGGAGGCGGCGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGA 2034
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2285 AAAGAGGCGGCGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGA 2344
Query 2035 GACAAAGACAGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAAT 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2345 GACAAAGACAGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAAT 2404
Query 2095 CCTCCAGCTATACCAAAACTTATTCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTC 2154
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2405 CCTCCAGCTATACCAAAACTTATCCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTT 2464
Query 2155 AGAGCCAAGTAA 2166
||||||||||||
Sbjct 2465 AGAGCCAAGTAA 2476
> AT5G08610.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:2790295-2794215
FORWARD LENGTH=2755
Length=2755
Score = 1373 bits (743), Expect = 0.0
Identities = 1215/1443 (84%), Gaps = 32/1443 (2%)
Strand=Plus/Plus
Query 739 GATTCTTATTTGACTAAGACAAGATTTGATCAGTAT-CCATTGTCTCCCTTATCGCTAAA 797
|||||||| ||| ||||||||||||||||||| | | ||| | |||||||||||||||||
Sbjct 1172 GATTCTTACTTGTCTAAGACAAGATTTGATCAAT-TCCCACTCTCTCCCTTATCGCTAAA 1230
Query 798 AGCCATCAAGGATGCTGGATACGAGACAATGACTGTTGTGCAGGAAGCTACTCTCCCTAT 857
||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 1231 AGCCATCAAGGATGCGGGATTTGAGACAATGACTGTTGTGCAGGAGGCTACTCTTCCTAT 1290
Query 858 AATTCTCAAAGGTAAAGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAGC 917
|||||| ||||||||||||||||||| |||||||||||||| ||||| ||||| || ||
Sbjct 1291 CATTCTCCAAGGTAAAGATGTCCTAGCCAAGGCCAAAACAGGCACTGGTAAAACCGTTGC 1350
Query 918 GTTTTTGCTTCCATCAATTGAAG-TAGTTGTCAAATCTCCTCCTACAAGCCCGGATAATA 976
|||||||||||| ||||||||| | ||| |||||||||||||| |||||| ||||| ||
Sbjct 1351 ATTTTTGCTTCCAGCAATTGAAGCT-GTTATCAAATCTCCTCCTGCAAGCCGGGATAGTA 1409
Query 977 AGCGACCCCCAATTCTTGCGCTTGTGATATGCCCAACTAGAGAACTTGCCAATCAAGCTG 1036
|| |||||||||| ||| ||||||| |||| || ||| | |||||||||| ||||||||
Sbjct 1410 GGCAACCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCCAGTCAAGCTG 1469
Query 1037 CAACAGAAGCAAACACCTTGCTAAAGTATCATCCATCTATTGGTGTTCAAGTTGTGATTG 1096
| |||| ||||| ||||| || |||||||| || |||||||||||||||||||||||||
Sbjct 1470 CGGCAGAGGCAAATACCTTACTGAAGTATCACCCCTCTATTGGTGTTCAAGTTGTGATTG 1529
Query 1097 GAGGCACAA-GACTTGGTTTAGAGCAAAAGCTTATGCAAACAAATCCTTGCCAGATT-TT 1154
||||||||| | ||| | |||||||| || ||||||||| |||||||||||||| ||
Sbjct 1530 GAGGCACAAAG-CTTCCTACAGAGCAAAGGCGTATGCAAACGAATCCTTGCCAGATCCTT 1588
Query 1155 AGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAACAAG 1214
|||||||||||||||||||||||||||||||| || ||||| | || || ||||||||
Sbjct 1589 -GTGGCTACACCTGGAAGGCTCAAAGACCATATTGAAAACACTTCTGGATTCGCAACAAG 1647
Query 1215 GTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTAGACATGGGCTT 1274
|| | |||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct 1648 ATTGATGGGTGTGAAAGTCCTTGTGCTTGACGAAGCTGATCATCTCTTGGACATGGG-TT 1706
Query 1275 TC-GCAAGG-ACATTGAGAGGATAATTTCCGCTGTTCCTAAGGAGAGACAAAC-TTTTCT 1331
|| | |||| ||||||||||||||||| |||||||||||||| |||||||||| |||| |
Sbjct 1707 TCCG-AAGGGACATTGAGAGGATAATTGCCGCTGTTCCTAAGCAGAGACAAACATTTT-T 1764
Query 1332 ATTTTCTGCCACAGTACCTGAAGAGGTTCGCCAAATATGCC-TAGTTGCTCTGAGGCGGG 1390
|||||||||||| |||||||||||||| ||||||||||||| | |||||||||| ||||
Sbjct 1765 ATTTTCTGCCACCGTACCTGAAGAGGTCCGCCAAATATGCCAT-GTTGCTCTGAAACGGG 1823
Query 1391 ATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACGCATCAACAGGTCAGAC 1450
|||| ||||| |||||||||| || || ||| || ||||| |||||| |||||| ||
Sbjct 1824 ATCATGAGTTCATCAATTGTGTCCAAGAGGGCTCTGGGGAGACACATCAAAAGGTCACAC 1883
Query 1451 AAATGCACATGATTGCATCACTAGACAGACATTTCTCTCTTGTGTACACA--CTTCTTCG 1508
||||| |||||||||||||||| || |||||||| || ||| | ||| ||||||
Sbjct 1884 AAATGTACATGATTGCATCACTGGATAGACATTTTTCGCTTCT--ACATGTGCTTCTTAA 1941
Query 1509 CCAACACATTATGGATAACGTAGACTATAAGGTCATTGTCTTCTGTACAACTGCCATGGT 1568
||||||| ||||| || ||||||||||| || | |||||||||||||| |||||
Sbjct 1942 AGAACACATCGCAGATAATGTGGACTATAAGGTTATCATTTTCTGTACAACTGCTATGGT 2001
Query 1569 TACAAAATTAGTTGCTGATCTACT-AGGTGAGATAAACTTAAATGTGAGAGAGATCCATT 1627
|||| ||| || |||||||| || || | || ||| | | || || |||||||||||||
Sbjct 2002 GACAAGATTGGTGGCTGATCTGCTTAG-TCAGCTAAGCCTGAACGTCAGAGAGATCCATT 2060
Query 1628 CTAGAAAACCGCAGAGTTACAGGACGAGGGTTTCTAATGAGTTCCGAAAATCCAAGGGT- 1686
|||||||||||||||||||||| || || |||||| |||||||||| || ||||||| |
Sbjct 2061 CTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGGCTA 2120
Query 1687 TTGATTCTGGTAACATCTGATGTATCTGCTCGAGGAGTCGATTACCCTGATGTGACCCTT 1746
|| || || || |||||||||||||||||||| || || ||||||||||||||| | ||
Sbjct 2121 TT-ATCCTAGTCACATCTGATGTATCTGCTCGTGGTGTGGATTACCCTGATGTGTCA-TT 2178
Query 1747 GTTT-TACAGGTGGGATTGCCAAAAGACAGAGAACAATATATACACAGACTTGGTAGAAC 1805
| | ||||| ||||||||||| |||||| || || |||||||| |||||||| |||||
Sbjct 2179 GGTCGTACAGATGGGATTGCCATCAGACAGGGAGCAGTATATACATAGACTTGGCAGAAC 2238
Query 1806 GGGGAGAAAAGGAAAGGAAGGAGAAGGCCTATTGTTGTTGGCACCATGGGAGGAATACTT 1865
||| | ||||| |||||||| ||||| | || ||||||||||||||||| || |||||
Sbjct 2239 CGGGCGGAAAGGGAAGGAAGGGGAAGGAGTCTTATTGTTGGCACCATGGGAAGAGTACTT 2298
Query 1866 TCTATCATCTCTGAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCAATAGACCCAGA 1925
| | |||||| | ||||| || |||||||| |||||||| || || |||||||||||||
Sbjct 2299 TATGTCATCTGTTAAAGACTTGCCCATCACCAAGTCTCCACTACCGCCAATAGACCCAGA 2358
Query 1926 AACTGTAAAAAAGGTGCA-AAAGGCGCTTTGCCATGTTGAGATGAGGAACAAGGAGGCGG 1984
|||| |||| |||||| ||||| ||| |||| || || |||| ||||||||||||||
Sbjct 2359 GGCTGTGAAAAGGGTGCAGAAAGG-GCTGAGCCAAGTGGAAATGAAGAACAAGGAGGCGG 2417
Query 1985 CGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGAGACAAAGAC- 2043
|||||||||| ||||||||||||||||| || ||||||||||||| |||||||| |||
Sbjct 2418 CGTATCAGGCGTGGTTGGGTTACTACAAATCTCAGAAGATGATTGCAAGAGACAC-GACC 2476
Query 2044 AGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAATCCTCCAGCT 2103
|| || |||||| |||| || |||||||| || || ||||||||||||| || ||||||
Sbjct 2477 AGACTGGTGGAGCTGGCCAATGAGTTTAGCCGCAGCATGGGACTTGACAGCCCACCAGCT 2536
Query 2104 ATACC-AAAACTTATTCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTCAGAGCCAA 2162
|| || |||| | ||||||| ||||||||||||||||| ||||||||||| ||| ||||
Sbjct 2537 ATCCCCAAAAATG-TTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTCTTAGAACCAA 2595
Query 2163 GTA 2165
|||
Sbjct 2596 GTA 2598
> AT5G08620.1 | Symbols: STRS2, ATRH25 | DEA(D/H)-box RNA helicase
family protein | chr5:2794457-2797660 FORWARD LENGTH=1887
Length=1887
Score = 1282 bits (694), Expect = 0.0
Identities = 1200/1442 (83%), Gaps = 44/1442 (3%)
Strand=Plus/Plus
Query 739 GATTCTTATTTGACTAAGACAAGATTTGATCAGTAT-CCATTGTCTCCCTTATCGCTAAA 797
|||||||||||| | ||||||||||||||||||| | ||| ||||||||||| || ||||
Sbjct 303 GATTCTTATTTGTCAAAGACAAGATTTGATCAGT-TCCCACTGTCTCCCTTAACGTTAAA 361
Query 798 AGCCATCAAGGATGCTGGATACGAGACAATGACTGTTGTGCAGGAAGCTACTCTCCCTAT 857
|| || |||||||||||| |||||||||||||||| ||||| |||||||| ||| |
Sbjct 362 AGGAATTGAGGATGCTGGATTTAAGACAATGACTGTTGTTCAGGAGGCTACTCTTCCTCT 421
Query 858 AATTCTCAAAGGTAAAGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAGC 917
|||||| ||||||||||| |||| || |||||||||||||| ||||||||||| || ||
Sbjct 422 CATTCTCCAAGGTAAAGATATCCTTGCGAAGGCCAAAACAGGCACTGGGAAAACAGTTGC 481
Query 918 GTTTTTGCTTCCATCAATTGAAG-TAGTTGTCAAATCTCCTCCTACAAGCCCG-GATAAT 975
|||||||||||||||||||||| | ||| ||||| |||||||| |||| ||| ||||||
Sbjct 482 ATTTTTGCTTCCATCAATTGAAGCT-GTTATCAAAGCTCCTCCTGCAAG-CCGTGATAAT 539
Query 976 AAGCGA-CCCCCAATTCTTGCGCTTGTGATATGCCCAACTAGAGAACTTGCCAATCAAGC 1034
| || | ||||||||| ||| ||||||| |||| || ||| | |||||||| ||||||
Sbjct 540 AGGC-ATCCCCCAATTATTGTGCTTGTGGTATGTCCTACTCGGGAACTTGCTTGTCAAGC 598
Query 1035 TGCAACAGAAGCAAACACCTTGCTAAAGTATCATCCATCTATTGGTGTTCAAGTTGTGAT 1094
||| |||||||||||| |||||| |||||||| ||||||||||||||||||||||||||
Sbjct 599 TGCTGCAGAAGCAAACATCTTGCTCAAGTATCACCCATCTATTGGTGTTCAAGTTGTGAT 658
Query 1095 TGGAGGCAC-AAGACTTGGTTTAGAGCAAAAGC-TTATGCAAACA-AATCCTTGCCAGAT 1151
||||||||| ||| ||| | ||||||| || | |||||| | | ||||||||||||
Sbjct 659 TGGAGGCACTAAG-CTTCCTACGGAGCAAAGGCGCT-TGCAAA-AGAGTCCTTGCCAGAT 715
Query 1152 TTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAAC 1211
| | ||||||||||| ||||||||||||||||||||||| ||||| | || ||||||||
Sbjct 716 TCTCGTGGCTACACCCGGAAGGCTCAAAGACCATATCGACAACACTTCTGGATTTGCAAC 775
Query 1212 AAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTAGACATGGG 1271
|||||| | ||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 776 AAGGTTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTCTTGGACATGGG 835
Query 1272 CTTTC-GCAAGG-ACATTGAGAGGATAATTTCCGCTGTTCCTAAGGAGAGACAAAC-TTT 1328
|||| | |||| | ||||||||||||||| | |||||||||||| |||||||||| |||
Sbjct 836 -TTTCCG-AAGGGAAATTGAGAGGATAATTGCTGCTGTTCCTAAGCAGAGACAAACATTT 893
Query 1329 TCTATTTTCTGCCACAGTACCTGAAGAGGTTCGCCAAATATGCC-TAGTTGCTCTGAGGC 1387
| ||||||| ||||||||| |||| ||||| ||||||||||||| | |||||||||| |
Sbjct 894 T-TATTTTCCGCCACAGTATCTGATGAGGTCCGCCAAATATGCCAT-GTTGCTCTGAAAC 951
Query 1388 GGGATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACGCATCAACAGGTCA 1447
||||||| || || ||||| |||||||| || || || |||||||||||| ||||
Sbjct 952 GGGATCATGAATTCGTCAACTGTGTTCAAGAGGGTGCTGGGGAGACGCATCAAAAGGTTT 1011
Query 1448 GACAAATGCACATGATTGCATCACTAGACAGACATTTCTCTCTTGTGTACACACTTCTTC 1507
||||||| |||||||||||||| |||| ||||||||||| ||| | || |||||
Sbjct 1012 CACAAATGTACATGATTGCATCATTAGATAGACATTTCTCGCTTCTATATGGTCTTCTGA 1071
Query 1508 GCCAACACATTATGGATAACGTAGACTATAAGGTCATTGTCTTCTGTACAACTGCCATGG 1567
||||||| | ||||| || | ||||||||| ||| | |||||||||||||| ||||
Sbjct 1072 AAAAACACATCACAGATAATGTGGGCTATAAGGTTATTATTTTCTGTACAACTGCTATGG 1131
Query 1568 TTACAAAATTAGTTGCTGATCTACTAGGTGAGATAAAC-TTAAATGTGAGAGAGATCCAT 1626
|||||| ||| || |||||||| || ||| || ||| | |||| || ||||||||||||
Sbjct 1132 TTACAAGATTGGTGGCTGATCTGCTTGGTAAGCTAAGCCTTAAC-GTCAGAGAGATCCAT 1190
Query 1627 TCTAGAAAACCGCAGAGTTACAGGACGAGGGTTTCTAATGAGTTCCGAAAATCCAAGGGT 1686
||||||||||||||||||||||| || || |||||| |||||||||| || |||||| ||
Sbjct 1191 TCTAGAAAACCGCAGAGTTACAGAACCAGAGTTTCTGATGAGTTCCGCAAGTCCAAGAGT 1250
Query 1687 -TTGATTCTGGTAACATCTGATGTATCTGCTCGAGGAGTCGATTACCCTGATGTGACCCT 1745
|| || || || |||||||||||||||||||| || || ||||||||||||||| || |
Sbjct 1251 ATT-ATCCTTGTGACATCTGATGTATCTGCTCGTGGTGTTGATTACCCTGATGTGTCC-T 1308
Query 1746 T-GTTTTACAGGTGGGATTGCCAAAAGACAGAGAACAATATATACACAGACTTGGTAGAA 1804
| || ||||| ||||||||||| |||||| |||||||||||||| |||||||| ||||
Sbjct 1309 TAGTCGTACAGATGGGATTGCCATCAGACAGGGAACAATATATACATAGACTTGGCAGAA 1368
Query 1805 CGGGGAGAAAAGGAAAGGAAGGAGAAGGCCTATTGTTGTTGGCACCATGGGAGGAATACT 1864
| ||| | ||||| |||||||||||||| || | ||||||||||| ||||| || ||||
Sbjct 1369 CTGGGCGGAAAGGTAAGGAAGGAGAAGGTGTACTATTGTTGGCACCGTGGGAAGAGTACT 1428
Query 1865 TTCTATCATCTCTGAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCAATAGACCCA- 1923
||||||| ||| | || || || |||||||| |||||| || | || ||||||||| |
Sbjct 1429 TTCTATCTTCTGTTAAGGACTTGCCCATCACAAAGTCTTCTTTACCGCCAATAGACC-AT 1487
Query 1924 GAAACTGTAAAAAAGGTGCA-AAAGGCGCTT-TGCCATGTTGAGATGAGGAACAAGGAGG 1981
|| |||| ||||||||||| ||||| |||| | ||| || || |||| |||||||||||
Sbjct 1488 GAGGCTGTGAAAAAGGTGCAGAAAGG-GCTTAT-CCAAGTGGAAATGACGAACAAGGAGG 1545
Query 1982 CGGCGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGAGACAAAG 2041
|||| |||||||| ||||||||||||||||| || ||||||| ||||| ||||||| |
Sbjct 1546 CGGCATATCAGGCATGGTTGGGTTACTACAAATCGCAGAAGAAGATTGCTAGAGACAC-G 1604
Query 2042 AC-AGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTT-GACAATCC-TC 2098
|| || || |||||||| || || |||||||| || |||||||||||| | || ||| ||
Sbjct 1605 ACCAGACTGGTGGAGTTAGCTAATGAGTTTAGCCGCAGTATGGGACTTAG-CA-TCCCTC 1662
Query 2099 CAGCTATACCA--AAACTTATTCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTCAG 2156
| ||||| || ||| | |||||||| ||||||||||||||||| ||||||||| | ||
Sbjct 1663 CGGCTATCCCTGTAAA-T-ATTCTTGGCAAGATGGGTCTCAAAAACGTTCCTGGTATTAG 1720
Query 2157 AG 2158
||
Sbjct 1721 AG 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107429166300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5