BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918157

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63740.1 | Symbols:  | RING/U-box superfamily protein | chr5...   189    2e-47


> AT5G63740.1 | Symbols:  | RING/U-box superfamily protein | chr5:25510776-25511456 
REVERSE LENGTH=681
Length=681

 Score =  189 bits (102),  Expect = 2e-47
 Identities = 171/203 (84%), Gaps = 10/203 (5%)
 Strand=Plus/Plus

Query  193  GAGTATCTTA-AGAAAAATTTCTACTCTCTGGAGGAAAACCTCACCGTGATCTCATGTCC  251
            ||||| | || ||| ||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct  481  GAGTA-CCTAGAGACAAATTTCTACTCTCTGGAGGAAAACTTAACCGTAATCTCATGTCC  539

Query  252  TGATCAAGATTGTGGAGCTTCTGTTGGACCAAAAACGATTGACAGACTAGGAGTACGTGA  311
            ||||||||||||||||||||| ||| ||| |||||||||||| | ||||||||||| |||
Sbjct  540  TGATCAAGATTGTGGAGCTTCGGTTAGACTAAAAACGATTGAGAAACTAGGAGTACATGA  599

Query  312  TCAAGAGATGTACGGGAACTATATTCTGAGA-TCTTACCTTGAGA--G----CAAGCAGC  364
            |||||| ||||||  ||  ||| || ||||| | |||| ||||||  |    ||| ||||
Sbjct  600  TCAAGACATGTACTTGAGTTATGTTATGAGAGT-TTACATTGAGAATGAGAGCAAACAGC  658

Query  365  TCCCTGCACCGGATTCCAACTAG  387
            ||||||||||||||  |||||||
Sbjct  659  TCCCTGCACCGGATGACAACTAG  681



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5