BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918215
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64240.2 | Symbols: AtMC3, MC3 | metacaspase 3 | chr5:256956... 649 0.0
> AT5G64240.2 | Symbols: AtMC3, MC3 | metacaspase 3 | chr5:25695620-25697416
FORWARD LENGTH=1472
Length=1472
Score = 649 bits (351), Expect = 0.0
Identities = 393/412 (95%), Gaps = 7/412 (2%)
Strand=Plus/Plus
Query 1 ATGGCTACTCGGAGAGAAGTACGGTGCCAGTGCGGCAGACGGATGTGGGTTCAACCAGAC 60
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 217 ATGGCTAGTCGGAGAGAAGTACGGTGCCGGTGCGGCAGACGGATGTGGGTTCAACCAGAC 276
Query 61 GTCCGTACTGTCCAATGCTCAACCTGCCACACCGTCACGCAGCTCTACTCGCTCA-TGGA 119
| |||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 277 GCCCGTACCGTCCAATGCTCAACCTGCCACACCGTCACGCAGCTCTACTCGCT-AGTGGA 335
Query 120 CATAGCGCGCGGTGCAAACCGCATAATTCATGGGTTTCAACAGCTACTTAGACAACATCA 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 336 CATAGCTCGCGGTGCAAACCGCATAATTCATGGGTTTCAACAGCTACTTAGACAACACCA 395
Query 180 ACCGCAACATCAAT-ATCATGAACAACAACAACAAATGATGGCTCAACCGCCACCGCGGC 238
|||||||||||| | | || | |||||||||||||||||||||||||||||||| ||||
Sbjct 396 ACCGCAACATCA-TGAACA--A-CAACAACAACAAATGATGGCTCAACCGCCACCACGGC 451
Query 239 TGCTTGAGCCCCTTCCCTCGCCGTTTGGGAAGAAGAGAGCAGTTTTATGCGGCTTGAACT 298
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 452 TGCTTGAGCCTCTTCCCTCGCCGTTTGGGAAGAAGAGAGCAGTTTTATGCGGCGTGAACT 511
Query 299 ATAAGGGAAAAAGTTATAGCTTGAAAGGTTGCATCAGTGATGCTAAATCCATGAGATCTT 358
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 512 ATAAGGGAAAAAGTTATAGCTTGAAAGGTTGCATCAGTGATGCTAAGTCCATGAGATCTT 571
Query 359 TCTTGGTTCAACAAATGGGTTTCCCTATTGACTCTATTCTCATGCTCACAGA 410
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TATTGGTTCAACAAATGGGTTTCCCTATTGACTCTATTCTCATGCTCACAGA 623
Score = 545 bits (295), Expect = 2e-154
Identities = 319/331 (96%), Gaps = 0/331 (0%)
Strand=Plus/Plus
Query 408 AGATCATAGATCAGTCAGAGCTTACAAAGGAACAGATGGTGGAGCAGCTTTCTGTTTCAG 467
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 AGACCATAGATCAGTCAGAGCTTACAAAGGAACAGATGGTGGAGCAGCTTTCTGTTTCAG 1034
Query 468 TGCTTGTGACGATGATGAAACCAGTGGTTACACTCCTGTATTCACGGGGAAGAACACAGG 527
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1035 TGCTTGTGACGATGATGAATCCAGTGGTTACACTCCTGTGTTCACGGGGAAGAACACAGG 1094
Query 528 AGCCATGACTTATAGCTTTATAAAGGCGGTGAAGACCGCTGGACCAGCCCCCACATATGG 587
|||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1095 AGCCATGACTTATAGCTTCATAAAGGCGGTGAAGACAGCTGGACCAGCACCCACGTATGG 1154
Query 588 CCACCTGCTTAACCTTATGTGTTCTGCAATACGAGAGGCCCAGTCTCGTCTCGCCTTTAA 647
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1155 CCACCTGCTTAACCTTATGTGTTCTGCAATACGAGAGGCCCAGTCTCGCCTCGCCTTTAA 1214
Query 648 CGGGGACTACGCAAGCTCTGATGCATCCGCGGAGCCACTGCTAACATCATCTGATGAATT 707
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1215 CGGGGACTACACAAGCTCTGATGCATCCGCGGAGCCACTGCTAACATCATCTGAGGAATT 1274
Query 708 CGACTTGTACGCGACAAAGTTTGTACTCTGA 738
||| ||||||||||||||||||||||||||
Sbjct 1275 TGACGTGTACGCGACAAAGTTTGTACTCTGA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5