BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918217
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64260.1 | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703929-2... 1210 0.0
AT5G09440.1 | Symbols: EXL4 | EXORDIUM like 4 | chr5:2938347-29... 344 8e-94
> AT5G64260.1 | Symbols: EXL2 | EXORDIUM like 2 | chr5:25703929-25705316
FORWARD LENGTH=1388
Length=1388
Score = 1210 bits (655), Expect = 0.0
Identities = 749/795 (94%), Gaps = 4/795 (1%)
Strand=Plus/Plus
Query 64 GTAACATCACCGTTAATCTCATCTGGTACGGGAAAATTCACACCTATTCAACGGTCCGTA 123
|||||||||| || |||||| | ||||||||| ||||||||||| || ||||||||||||
Sbjct 179 GTAACATCACAGTCAATCTCGTATGGTACGGG-AAATTCACACCGATCCAACGGTCCGTA 237
Query 124 ATCGTCGATTTCATCCGCTCGCTCAACTCCAAAAGACGTTGCATCCTCCGCCGCAGTTCC 183
|||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||| |
Sbjct 238 ATCGTCGATTTCATCCACTCGCTAAACTCC-AAAGACGTTGCATCTTCCGCCGCAGTT-C 295
Query 184 CTTCCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATACAAAGGCGGATCCTCAACACTC 243
||| |||| || |||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 296 CTT-CCGTTGCTTCGTGGTGGAAGACGACGGAGAAATACAAAGGTGGCTCTTCAACACTC 354
Query 244 GTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCTCGGAAAATCTCTAAAAAATCCT 303
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 355 GTCGTCGGGAAACAGCTTCTACTCGAGAACTATCCTCTCGGAAAATCTCTCAAAAATCCT 414
Query 304 CACCTCCGTGCTTTATCCACAAAACTTAACGGCGGTCTCCGTTCCATAACCGTCGTTCTA 363
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 415 TACCTCCGTGCTTTATCCACCAAACTTAACGGCGGTCTCCGTTCCATAACCGTCGTTCTA 474
Query 364 ACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGGCACTCACGGATCC 423
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 475 ACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGGGACTCACGGATCC 534
Query 424 TCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCGGCTTACGTCTGGGTCGGGAACTCC 483
||| | ||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 TCCGGTTCGAATCCCCGTCGCGCAGCTAACGGCGCGGCTTACGTATGGGTCGGGAACTCC 594
Query 484 GAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCACCAACCGATTTACGGACCACAA 543
||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 595 GAGACGCAGTGCCCTGGATATTGCGCGTGGCCGTTTCACCAGCCGATTTACGGACCACAA 654
Query 544 ACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGTTGACGGAATGATTATAAACCTC 603
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 ACGCCGCCGTTAGTAGCGCCTAACGGTGACGTTGGAGTTGACGGAATGATTATAAACCTT 714
Query 604 GCCACACTTCTCGCTAACACCGTCACGAATCCGTTTAATAACGGATATTACCAAGGCCCA 663
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 715 GCCACACTTCTAGCTAACACCGTGACGAATCCGTTTAATAACGGATATTACCAAGGCCCA 774
Query 664 GCAACTGCACCGCTTGAAGCTGTCTCCGCTTGTCCTGGCATATTCGGGTCGGGTTCTTAC 723
|||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||
Sbjct 775 CCAACTGCACCGCTTGAAGCTGTGTCTGCTTGTCCTGGTATATTCGGGTCAGGTTCTTAT 834
Query 724 CCGGGTTACGCGGGTCGAGTACTTGTTGACAAAACAACCGGGTCTAGTTACAACGCTCGT 783
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CCGGGTTACGCGGGTCGGGTACTTGTTGACAAAACAACCGGGTCTAGTTACAACGCTCGT 894
Query 784 GGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTGGGATCCGCAGAGTTTGACGTGT 843
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 895 GGACTCGCCGGTAGGAAATATCTATTGCCGGCGATGTGGGATCCGCAGAGTTCGACGTGC 954
Query 844 AAGACTCTGGTTTGA 858
|||||||||||||||
Sbjct 955 AAGACTCTGGTTTGA 969
> AT5G09440.1 | Symbols: EXL4 | EXORDIUM like 4 | chr5:2938347-2939461
FORWARD LENGTH=1115
Length=1115
Score = 344 bits (186), Expect = 8e-94
Identities = 458/583 (79%), Gaps = 44/583 (8%)
Strand=Plus/Plus
Query 66 AACATCAC-CGTTAATCTCATCTGGTACGGGAAAATTCACACCTATTCAACGGTCCGTAA 124
||||| || | |||||||||| |||||| ||||||||||| || || ||||||||| |||
Sbjct 153 AACATTACTC-TTAATCTCATTTGGTAC-GGAAAATTCACCCCAATCCAACGGTCCATAA 210
Query 125 TCGTCGATTTCATCCGCTCGCTCAACTCCAAAAGACGT-TG-CATCCTCCGCCGCAGTTC 182
|||||||||||||||||| || | | | || | || || || ||||| || |
Sbjct 211 TCGTCGATTTCATCCGCT--CT--A-T-C---AG--TTCTGTCA-CCGCCGCCAAAGGT- 257
Query 183 CCTTCCCGTCGCGTCGTGGTGGAAGACGACGGAGAAATACAAAGGCGGA-TCCTCAACAC 241
|| | ||||||||||||||||||||||||||||||| |||||| ||| | ||||| |
Sbjct 258 CCAT-CCGTCGCGTCGTGGTGGAAGACGACGGAGAAGTACAAAACCGGCGTT-TCAACTC 315
Query 242 TCGTCGTCGGGAAACAGCTTCTCCTCGAGAACTATCCTCTCGGAAAATCTCTAAAAAATC 301
| || ||||| |||||||| ||||| ||||| || |||||||||||||| ||||| | |
Sbjct 316 TTGTTGTCGGTAAACAGCTCCTCCTTGAGAATTACCCTCTCGGAAAATCCCTAAAGAGCC 375
Query 302 CTCACCTCCGTGCTTTATCCA-CAAAACTTAACG--GC-GGT-CTCCGTTCCATAACCGT 356
|| |||| |||||| | || | |||| ||||||| | ||| ||| || | ||||||||
Sbjct 376 CTTACCTTCGTGCTCTGTCAAGCAAA-CTTAACGCTGGTGGTGCTCGGT-CAATAACCGT 433
Query 357 CGTTCT-AACGGCGAAAGATGTTACCGTCGAAAGATTCTGTATGAGCCGGTGCGGCACTC 415
||| || |||||||||||| || ||||| || || ||||||||| ||| ||||| ||||
Sbjct 434 CGT-CTTAACGGCGAAAGACGTCACCGTTGAGGGACTCTGTATGAACCGATGCGGGACTC 492
Query 416 ACGGATCCTCCAGCTCGAAACCGCGTCGCGCAGCTAACGGCGCG-GCTTACGTCTGGGTC 474
|||| || || || || | || || |||| | | | |||||||| ||||||
Sbjct 493 ACGGGTCAA--AG-TC-AA---GT-TC-CGT---TAACAGTG-GAGCTTACGTGTGGGTC 539
Query 475 GGGAACTCCGAGACGCTGTGCCCTGGATATTGCGCCTGGCCATTTCACCAACCGATTTAC 534
|| ||||| || |||| ||| ||||| || ||||| ||||| ||||| || || || |||
Sbjct 540 GGAAACTCTGAAACGCAGTGTCCTGGTTACTGCGCGTGGCCGTTTCATCAGCCTATCTAC 599
Query 535 GGACCACAAACGCCGCCATTAGTCGCGCCTAACGGTGACGTTGGAGTTGACGGAATGATT 594
||||| || | ||||| |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 600 GGACCTCAGTCTCCGCCGTTAGTCGCACCTAACGGCGACGTCGGAGTTGACGGAATGATT 659
Query 595 ATAAACCTCGCCACACTTCTCGCTAACACCGTCACGAATCCGT 637
|||||| |||| || ||||| | ||||||||| ||||||||||
Sbjct 660 ATAAACATCGCGACTCTTCTTGTTAACACCGTAACGAATCCGT 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5