BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918231
Length=2598
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing ... 2525 0.0
AT5G09560.1 | Symbols: | RNA-binding KH domain-containing prot... 165 2e-39
> AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743346-25747652 FORWARD LENGTH=2969
Length=2969
Score = 2525 bits (1367), Expect = 0.0
Identities = 1588/1689 (94%), Gaps = 37/1689 (2%)
Strand=Plus/Plus
Query 945 TGCTTTACGCAGGCATGTTGAGGCGGACCGACAAGATGCTTTACGCAGGCATATTGAGGC 1004
||||||||||| |||| ||||||| ||||| ||||||| ||||||||||||| |||||||
Sbjct 1011 TGCTTTACGCATGCATATTGAGGCAGACCGGCAAGATGTTTTACGCAGGCATGTTGAGGC 1070
Query 1005 AGACCGGCAAGATGTTTTACGCAGGCATATTGATGTGGTTCCTCGAGAAACGTTATACAT 1064
||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1071 GGACCGGCAAGATGCTTTACGCAGGCGTATTGATGTAGTTCCTCAAGAAACGTTATACAT 1130
Query 1065 GCCTTCCGATGTTGTCAGGGGAGATTGTTTTCGACAGCATAAAGAGAGGGATGATTCTCA 1124
|||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1131 GCCTTCTGATGTTCTCAGGGGAGATTGTTTTCGACAGCATAGAGAGAGGGATGATTCTCA 1190
Query 1125 TGATTCCTTGCATAGACCTTTCGAGATGGTTCCACGTGATGCTATGGGCATGCCTTTTGA 1184
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1191 TGATTCCTTGCATAGACCTTTCGAAATGGTTCCACGTGATGCTATGGGCATGCCTTTTGA 1250
Query 1185 GTCGTTTCCACGTGATGCTTACGGAAGGCCTATTGAAACAATCCCACAAGAAACTCTTCG 1244
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1251 GTCGTTTCCACGTGATGCTTACGGAAGGCCTATTGAAACAATGACACAAGAAACTCTTCG 1310
Query 1245 TCGGCAAAGTGCAGATTATCTTGCACATCGTTATTCGACTCTAGACACACA---T---AG 1298
| |||||||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1311 TGGGCAAAGTGCAGATTATCTTGCACATCGTTATTCGACTTTAGACACACATCCTCACAG 1370
Query 1299 CATT-ACTACGTCTGCTTCAATAGCTAACACTGCCTCCATGAAGCCACCTCCATCAGAAG 1357
| || ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1371 C-TTCACTACGTCTGCTTCAATGGCTAACACTGCCACCATGAAGCCACCTCCATCAGAAG 1429
Query 1358 TGGAAGTAGGGAACCAAGATGTGGTTTTTAAGATACTTTGTTCCACTGAGAATGCTGGCG 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TGGAAGTAGGGAACCAAGATGTGGTTTTTAAGATACTTTGTTCCACTGAGAATGCTGGCG 1489
Query 1418 GAGTTATCGGGAGTGGGGGTAAAGTTGTCAGGATGCTTCATAGCGAAACAGGTGCCTTCA 1477
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GAGTTATCGGGACTGGAGGTAAAGTTGTCAGGATGCTTCATAGCGAAACAGGTGCCTTCA 1549
Query 1478 TAAATGTGGGAAATACACTTGCTGATTGTGAAGAACGTCTGATTGCAGTAACTGCACCAG 1537
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1550 TAAATGTGGGAAATACACTTGATGATTGTGAAGAACGTCTGATTGCAGTAACTGCATCAG 1609
Query 1538 AGAACCCTGAATGTCAAAGCTCGCCAGCCCAGAAAGCTATTATGCTTCTTTTTTCTAGAT 1597
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct 1610 AGAACCCTGAATGTCAAAGCTCGCCAGCCCAGAAAGCGATTATGCTTATTTTTTCAAGAT 1669
Query 1598 TATTTGAGCTTTCCACTaaaaaaaTCCTAGATAATGGCCCAAGGACATCTATCACTGCAC 1657
||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1670 TATTTGAGCTTGCCACTAACAAAATCCTAGATAATGGCCCAAGGTCATCTATCACTGCAC 1729
Query 1658 GGCTTGTTGTCCCAACAAGTCAGATTGGTTGTGTGCTGGGGAAAGGAGGTGTTATTGTTT 1717
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1730 GGCTTGTTGTCCCAACAAGTCAGATTGGTTGTGTGCTGGGAAAAGGAGGTGTTATTGTTT 1789
Query 1718 CAGAAATGCGGAAAACCACTGGGGCCT-CAATTCAAATTTTGAAGGTTGAGCAGAACCCA 1776
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1790 CGGAAATGCGGAAAACCACTGGGG-CTGCAATTCAAATTTTGAAGGTTGAGCAGAACCCA 1848
Query 1777 AAATGTGTTTCAGAGAATGATCAAGTTATCCAGATTACAGGAGAGTTCCCTAATGTGAGA 1836
|||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1849 AAATGTATTTCAGAGAATGATCAAGTTGTGCAGATTACAGGAGAGTTCCCTAATGTGAGA 1908
Query 1837 GAAGCCATTTTCCATATTACAAGCAGGCTGCGAGACAGTGTTTTCTCCAACTCAATGAAA 1896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 GAAGCCATTTTCCATATTACAAGCAGGCTGCGAGACAGTGTTTTCTCCAACTCAATGAAA 1968
Query 1897 AATTCCATAACCAAGAGCAGCTCCGCCTTAACTACAGAGAGAATCTACCACAGACAACCA 1956
|||||| || ||||||||||||||||||||||||| |||||| ||||| |||||||| ||
Sbjct 1969 AATTCCTTAGCCAAGAGCAGCTCCGCCTTAACTACTGAGAGATTCTACGACAGACAATCA 2028
Query 1957 GATAATCCTCTGTCTATTGGGTCTCATCAATCCGTTAGTAATCCACCTACCAACTCTTCA 2016
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 2029 GACAATCCTCTGTCTATTGGGTCTCATCAATCCGTTAGTAATCCAGCTACCAACTCCTCA 2088
Query 2017 AGTCTGCACAGAAGATCTGAGGATTCCTTTTTAAGTGGGTCTCATTCATCAGTTAACTAT 2076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2089 AGTCTGCACAGAAGATCTGAGGATTCCTTTTTAAGTGGGTCTCATTCATCAGTTAACTAT 2148
Query 2077 TCCAGACCTGTTGGCACAGATCCTTACATAAGACCAGAAGACCCGTTTCCTGATAGGTTT 2136
|||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2149 TCCAGATCAGTTGGCACAGATCCTTACATAAGACCAGAAGACCCATTTCCTGATAGGTTT 2208
Query 2137 AATCCCTCTGCAGGCTATTCTCCTAATTTTGGTCGGCGGTTTACCATGGACCACAGTGAT 2196
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2209 AATCCCTCAGCAGGCTATTCTCATAATTTTGGTCGGCGGTTTACCATGGACCACAGTGAT 2268
Query 2197 ATCTCCCATCACTTAAGTGAGGTCCCATCTCGTTTGTGGGCGTCCCCGCCTCCAGCAGCT 2256
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2269 AACTCCCATCACTTAACTGAGGCCCCATCTCGTTTGTGGGCGTCCCCGCCTCCAGCAGCT 2328
Query 2257 CCAAGAGGCTTATCTGATGCCAGTGGCGGATTATCTTCTGCTA-----GG----G--C-T 2304
||||||||||||||||||||||||||||||||||||||||| | || | | |
Sbjct 2329 CCAAGAGGCTTATCTGATGCCAGTGGCGGATTATCTTCTGCAAGGGCTGGCCATGTACTT 2388
Query 2305 GGC------CATG--CGCTTGG------C-AGTGGACACAAATCTGCCATCGTTACAAAC 2349
||| |||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 2389 GGCAGTTTACATGCTCGCTTGGTCTTTTCTAGTGGACACAAATCTGCCATCGTTACAAAC 2448
Query 2350 ACAACCGTGGAAATTAGAGTTCCAGAAAATGCTATGAGCTTTGTGTATGGAGAGCAGGGC 2409
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2449 ACTACCGTGGAAATTAGAGTTCCAGCTAATGCTATGAGCTTTGTGTATGGAGAGCAGGGT 2508
Query 2410 TACAATCTAGAGCAACTGAGACAGATATCGGGTGCGAGGGTCATAGTCCATGAACCTCCT 2469
|||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 2509 TACAATCTGGAACAACTGAGACAGATATCGGGTGCAAGGGTCATAATCCATGAACCTCCT 2568
Query 2470 CTAGGAACAAGTGACAGGATCATTGTCATATCTGGAACACCTGATCAAACCCAGGCTGCT 2529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2569 CTAGGAACAAGTGACAGGATCATTGTCATATCTGGAACACCTGATCAAACCCAGGCTGCC 2628
Query 2530 CAAAACCTCCTTCATGCCTTCATCCTTACAGGTGAAACCTCATTGTCCAAAAAATACAAC 2589
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2629 CAAAACCTTCTTCATGCCTTCATCCTTACAGGTGAAACCTCATTGTCCAAAAAATACAAC 2688
Query 2590 CTAAACTAG 2598
|||||||||
Sbjct 2689 CTAAACTAG 2697
Score = 1533 bits (830), Expect = 0.0
Identities = 937/989 (95%), Gaps = 6/989 (1%)
Strand=Plus/Plus
Query 16 TTTAATACAGAGAAGAGATCCGGAGCACTGGATCCGGGTTCAGGATTCGGATCTTCGAAG 75
||| || ||||||||||||||||||| | ||||| |||||||||||||||||||| |||
Sbjct 118 TTTCATGCAGAGAAGAGATCCGGAGCGTTTGATCCAGGTTCAGGATTCGGATCTTCCAAG 177
Query 76 AGGGTCAAAACACATCACACGCAGCTGCT-TCCGCCTCTGGTTGTGCCGGTGGGACACGC 134
||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 178 AGGGTCAAAACGCATCACACGCAGCTGCTCTCAG-CTCTGGTTGTGCCGGTGGGACACGC 236
Query 135 GGCATTTAGATTGCTATGCCCTTTATCACACGTCGGTGCGGTGATTGGAAAATCTGGAAA 194
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGCGTTTAGATTGCTCTGCCCTTTATCACACGTCGGTGCGGTGATTGGAAAATCTGGAAA 296
Query 195 CGTTATCAAACAGCTCCAACAATCAACCGGAGCTAAGATACGGGTCGAGGAGCCTCCGTT 254
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGTAATCAAACAGCTCCAACAATCAACCGGAGCTAAGATACGGGTCGAGGAGCCTCCGTC 356
Query 255 TGGGTCTCCGGATCGGGTCATCACGATAATTGCGCAAGCAGATTCGAAATCAAGGGTGAA 314
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 357 TGGGTCTCCGGATCGGGTCATCACGATAATCGCACAAGCAGATTCGAAATCAAGGGTGAA 416
Query 315 ATTGGGTGTTAATAACAATGGGAATGCTGAAGGAGAGAAGAAGGAGGAGGAAGTTGAGGT 374
|||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 417 ATTGGGTGCTAATAACAATGGCAATGCAGAAGGAGAGAAAAAGGAGGAGGAAGTTGAGGT 476
Query 375 ATCTAAAGCACAAGGAGCGTTGATTAAGGTATTCGAGCTTTTAGCGGCGGAAGCGGATAG 434
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 477 ATCTAAAGCACAAGGAGCGTTGATTAAGGTATTCGAGCTTTTAGCGGCGGAAGCTGATAG 536
Query 435 TGATACGGTCGTGTGCCGATTGTTGACTGAGTCTAGCCATGCTGGTGCTGTGATAGGCAA 494
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 537 TGATACGGTCGTGTGCCGATTGTTGACGGAGTCTAGCCATGCCGGTGCTGTGATAGGCAA 596
Query 495 AGGTGGTCAAATGGTGGGGAGCATTAGGAAAGAAACTGGCTGCAAAATTTCTATACGGAC 554
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 597 AGGTGGTCAAATGGTTGGGAGTATTAGGAAAGAAACTGGCTGCAAAATTTCTATACGGAT 656
Query 555 TGAGAATTTGCCGATTTGCGCTGATACTGATGACGAGATGGTGGAGATTGAAGGAAATGC 614
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 657 TGAGAATTTGCCGATTTGCGCTGATACTGATGACGAGATGGTGGAGGTTGAAGGAAATGC 716
Query 615 TATTGCTGTGAAA-AAAGCTCTTGTGTCTATCTCCCGCTGCTTGCAAAATTGTCAATCGA 673
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TATCGCTGT-AAAGAAAGCTCTTGTGTCTATCTCCCGCTGCTTGCAAAATTGTCAATCGA 775
Query 674 TTGACAAGGTAAGGATGGTCGGAAACAGACCTCTAGAAAAAGAGTTCCAAGCATCTTTGC 733
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 776 TTGACAAGGTAAGGATGGTTGGAAACAGACCTCTCGAAAAAGAGTTCCAAGCATCTTTGC 835
Query 734 ATAGGCCGATAGAGACAATCATTCAGGAGTCTCTTCCTAGGTCCATTGAAGTTAACCCTT 793
||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||
Sbjct 836 ATAGGCCTATAGAGACAATAATTCAGGAGTCACTTCCTAGGTCCGTTGAAGTTAACCCTT 895
Query 794 ACGATTATAGGCTGAGGAAA-GACGAGATATTTCCCCGAGGTACTTTAGCTCGGCCTAGC 852
|||||||||||||||| ||| ||||||||||||||||| || ||| |||||||| |||
Sbjct 896 ACGATTATAGGCTGAG-AAACGACGAGATATTTCCCCGGGGCACTGTAGCTCGGGCTAAT 954
Query 853 GATGTGATTCCTCATGATACTTTGCATCATAGGCATATTGAGGCGGTTCCCCAGGGTGCT 912
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 955 GATGTGATTCCTCATGATACTTTGCATCTTAGGCGTATCGAGGCGGTTCCCCAGGGTGCT 1014
Query 913 TTACGCATGCATATTGAGGCGGACCGGCAAGATGCTTTACGCAGGCATGTTGAGGCGGAC 972
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1015 TTACGCATGCATATTGAGGCAGACCGGCAAGATGTTTTACGCAGGCATGTTGAGGCGGAC 1074
Query 973 CGACAAGATGCTTTACGCAGGCATATTGA 1001
|| ||||||||||||||||||| ||||||
Sbjct 1075 CGGCAAGATGCTTTACGCAGGCGTATTGA 1103
Score = 95.3 bits (51), Expect = 3e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 981 TGCTTTACGCAGGCATATTGAGGCAGACCGGCAAGATGTTTTACGCAGGCATATTGA 1037
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1011 TGCTTTACGCATGCATATTGAGGCAGACCGGCAAGATGTTTTACGCAGGCATGTTGA 1067
Score = 84.2 bits (45), Expect = 6e-15
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 885 GCATATTGAGGCGGTTCC-CCAGGGTGCTTTACGCATGCATATTGAGGCGGACCGGCAAG 943
|||||||||||| | || || | || |||||||| |||| ||||||||||||||||||
Sbjct 1023 GCATATTGAGGCAG-ACCGGCAAGATGTTTTACGCAGGCATGTTGAGGCGGACCGGCAAG 1081
Query 944 ATGCTTTACGCAGGCATGTTGA 965
||||||||||||||| | ||||
Sbjct 1082 ATGCTTTACGCAGGCGTATTGA 1103
> AT5G09560.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:2967170-2969655 FORWARD LENGTH=1839
Length=1839
Score = 165 bits (89), Expect = 2e-39
Identities = 316/422 (75%), Gaps = 30/422 (7%)
Strand=Plus/Plus
Query 1465 ACAGGTGCCTTC-ATAAATGTGGGAAATACACTTGCTGATTGTGAAGAACGTCTGA-TTG 1522
|||| || |||| |||| ||||||| ||| || | |||| ||||| ||||| || | ||
Sbjct 997 ACAGATG-CTTCTATAAGTGTGGGAGATAGACATCCTGACTGTGATGAACG-CTTAGTTA 1054
Query 1523 CAGTAACTGCACCAGAG-AACCCTGAATGTCA-AAGCT-CGCCAGCCCAGAAAGCTATTA 1579
|| | || ||| ||| || || || | || || || || | |||||| |||| |||
Sbjct 1055 CAATTACAGCATTTGAGAAAACC--AAAGACATAACCTCCG-AATCCCAGAGAGCT-TTA 1110
Query 1580 TGCTTCTT-TTTTCTAGATTAT-T-TGAGCTTTCCACTaaaaaaaTCCTAGATAATGGCC 1636
| ||||| |||||| | || | |||| | ||||| |||| ||||||||| ||||
Sbjct 1111 -G-TTCTTGTTTTCTCTAACATGTATGAGAATGCCACTGCAAAAGTCCTAGATAGTGGCT 1168
Query 1637 CAAGGACATCTATCACTGCACGGCTTGTTGTCCCAACAAGTCAGATTGGTTGTGTGCTGG 1696
|| | |||||||||||||||||||||| |||| ||| ||||||| |||| |||| |
Sbjct 1169 TAACGTCATCTATCACTGCACGGCTTGTGGTCCGGTCAAATCAGATTAATTGTTTGCT-G 1227
Query 1697 GGA-AAGGA-GGT-GTTATTGTTTCAGA-AATGCGGAAAACCACTGGGGCCTCAATTCAA 1752
||| || || ||| | ||| | | ||| | | ||| ||||| || | | | ||
Sbjct 1228 GGAGAA-GAGGGTCG-TATAAAAAC-TACAATTCAGCAAAGAACTGGTGCTTTTA-T-AA 1282
Query 1753 AT-T-TTGAAGGTTGAGCAGAACCCAAAATGTGTTTCAGAGAATGATCAAGTTATCCAGA 1810
| | ||||| |||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 1283 CTGTATTGAACGTTGAGCAGAACCCAAAATGTGTTTCAGAGAACAATCAAGTTGTGCAGA 1342
Query 1811 TTACAGGAGAGTTCCCTAATGTGAGAGAAGCCATTTTCCATA-TTACAAGCAGGCTGCGA 1869
|| ||||||||||||| |||||||||||||| || ||| | |||| |||| ||| |||
Sbjct 1343 TTTCAGGAGAGTTCCCAAATGTGAGAGAAGCTATAAACCA-AGTTACCAGCATGCTACGA 1401
Query 1870 GA 1871
||
Sbjct 1402 GA 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128979210453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5