BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918243
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64510.1 | Symbols: TIN1 | unknown protein; FUNCTIONS IN: mo... 1947 0.0
> AT5G64510.1 | Symbols: TIN1 | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: biological_process
unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant
structures; EXPRESSED DURING: 10 growth stages; Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr5:25784404-25786307 FORWARD LENGTH=1618
Length=1618
Score = 1947 bits (1054), Expect = 0.0
Identities = 1203/1277 (94%), Gaps = 2/1277 (0%)
Strand=Plus/Plus
Query 3 GATGGGTCACAGGGTATTGGTTTGTGTCGGAGCTCTGTTTCTAATTTTATTCACGATTTT 62
|||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||
Sbjct 188 GATGGGTCACAGAGTATTGGTTTATGTTGGAGCTCTGTTTCTGATTTTATTCACGATTTT 247
Query 63 TCCATCGTCTAGAGCCTTGATTTCGTCTCCTGAGGCTAATCCTCCTTACCCTAAAGCTAT 122
|||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 248 TCCATCTTCTAGTGCTTTAATTTCGTCTCCTGATGCTAATCCTCCTTACCCTAAAGCTAT 307
Query 123 CTCGGATTTGAAGGAAGCAATTGTGAAGGGACTTGGATTCCAATCTGAGGAAGTCAAGGT 182
||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 308 CTCCGATTTGAAGGAATCAATTGTGAAGGGACTTGGATTCCAATCCGAGGAAGTCAAGGT 367
Query 183 TTCTGGTTTTGATGTAAGGGATGCATTGGTAGGACATTCTGTTTCTTATGAATTTGATTT 242
|||||| |||||| ||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 368 TTCTGGGTTTGATATAAGGGATGCATTGGTAGGACATTCTGTTTCATACGAATTTGATTT 427
Query 243 AGAAATCGACAACAAAGTGCTTCCATTTAAGCTTCTTGAGGATGTGAACCGATGGGAATA 302
|||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 428 AGAAATCGACAATAAAGTTCTCCCATTTAAGCTTCTTGAAGATGTGAACCGATGGGAATA 487
Query 303 CGTAGATCTCCCTATTTTCCAAGTAGAACAACCAAATAGA-AATGGTTTGGTTCCCATGA 361
||| |||||||| |||||||||||||||||||| | || |||||||||||||| ||||
Sbjct 488 CGTTGATCTCCCAATTTTCCAAGTAGAACAACCCTCT-GAGAATGGTTTGGTTCCTATGA 546
Query 362 GGAACAAGAAGACATCTAGTGATGATGTGTTACCTGTTTTAGCTCCGTTTCAACTTGCTG 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 547 GGAACAAGAAGACATCTAGTGATGATGTGTTACCTGTTTTAGCTCCGTTTCAACTTTCTG 606
Query 422 GTCCTATGGAACTTTGGATCCAAGATGCTAACAATATGCGCCTTTCTTTACCATATGATG 481
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 607 GTCCTATGGAACTTTGGATCCAAGATGCTAATAATATGCGCCTTTCTTTACCATATGATG 666
Query 482 TGGATGCTGGTGTTTTGAAGAAAGTGATATTATCAGATGGTTCTGTTGTAACAGTTAAAG 541
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 667 TGGATGCTGGTGTTTTGAAGAAAGTGATATTAGCAGATGGTGCTGTTGTAACAGTTAAAG 726
Query 542 GAGCTAGATCAGTTAGTTTGCGTCATCCCATTGATTTGCCACTTCCATTGAACCAAAGCT 601
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| || || |
Sbjct 727 GAGCTAGATCTGTTAGCTTGCGTCATCCCATTGATTTGCCACTTCCATTGAATCAGAGTT 786
Query 602 CCAATGAATTTGCCTCTGGACTTTTGTCGTTAGCTGAACAGCTTCGACGTGCTTCAACTG 661
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 787 CCAATGAGTTTGCTTCTGGACTTTTGTCGTTAGCTGAACAGCTTCGACGTGCTTCGACTG 846
Query 662 ATCAAGAAAGTCCACTTCTTTCTCTCCGCATTGTTGGTCCTACTTCTCTTGCATCAACTT 721
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 847 ATCAAGAAAGTCCAGTTCTTTCGCTCCGCATTGTTGGTCCTACTTCTCTTGCATCAACTT 906
Query 722 CACAATCTCCTGACAACAAACTCAAGCTTAAGCGTCTTGCTCCAGGACTTGTGGAACTAT 781
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 907 CACAATCTCCTGACAACAAACTCAAGCTTAAGCGTCTTGCTCCAGGACTTGTGGAATTAT 966
Query 782 CTTCCATGTCTAAAGACAAAAGGAGTCTCTCAACGATTGGCGCCAGCGCTATGACTACCG 841
|||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| |
Sbjct 967 CTTCCATGTCTAAAGACAAAAGGAGTCTCTCAACCATTGGTGCCAACGCTATGACTACTG 1026
Query 842 TTCTTACCCCAAGAGAGTTTACAACAATGTGGCCAATTACTTCAATCAATGGCTCAAATG 901
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1027 TTCTTACCCCAAGAGAGTTTACAACCATGTGGCCAATCACTTCAATCAATGGCTCAAATG 1086
Query 902 CTAACTTAATCGGCTTTGAGAAGCTACTGACCTCTGTTTTGGGTCCCAAAGCTCAGGAAA 961
|||||||| | ||||||||||| ||| ||||||||||||||||||| ||||||||||| |
Sbjct 1087 CTAACTTACTTGGCTTTGAGAAACTATTGACCTCTGTTTTGGGTCCGAAAGCTCAGGAGA 1146
Query 962 AAGGTTCCTTTAAGGTGTTGAAAGCGAATGTCGCGGCTCAAACGTTTATGAAGATTGGTT 1021
||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1147 AAGGTTCCTTTAAGGTGTTAAAAGCGAAAGTCGCTGCTCAAACCTTTATGAAGATTGGTT 1206
Query 1022 TTGGTGTAGAAAAGAAGCTCAAGGAAGCAGATCTTGAAGGTTTAAGCTTTCCAGAGTGGC 1081
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1207 TTGGCATAGAAAAGAAGCTCAAGGAAGCAGATGTTGAAGGTTTAAGCTTTCCAGAGTGGC 1266
Query 1082 GAACAAAGCCTGAGACAATGAGAATGCATTTCGAGGTTCTTGCTAAAGTTGATGGAGAGA 1141
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1267 GAACAAAGCCTGAGACAATGAGAATGCATTTTGAGGTTCTTGCTAAAGTTGATGGTGAGA 1326
Query 1142 AAGTTATCCCAGAGAACATAATGCGAGTTGATCCGATACCATTGGAGGACACGATTGCGC 1201
| |||||||| |||||| |||||||||||||||| || ||| ||||||||||||| ||||
Sbjct 1327 ATGTTATCCCGGAGAACGTAATGCGAGTTGATCCAATCCCACTGGAGGACACGATAGCGC 1386
Query 1202 AAAATGTGATTACTGGAAATGTAACCATGTCGAAACTTCCAATCATTCAGTCTCCTCCAA 1261
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1387 AAAATGTGATTACTGGAAATGTAACCATGTCGAAACTTCCAATCATTGAGTCTCCTCCAA 1446
Query 1262 GCCCTTTCACTTTGTAA 1278
||||||| || ||||||
Sbjct 1447 GCCCTTTTACCTTGTAA 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5