BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918244
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64520.1 | Symbols: XRCC2, ATXRCC2 | homolog of X-ray repair... 1683 0.0
> AT5G64520.1 | Symbols: XRCC2, ATXRCC2 | homolog of X-ray repair
cross complementing 2 (XRCC2) | chr5:25788069-25790204 FORWARD
LENGTH=1119
Length=1119
Score = 1683 bits (911), Expect = 0.0
Identities = 1060/1131 (94%), Gaps = 14/1131 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGAAGAAGAAGCGCGTAGTTGGATTCGCGGAGATGAAACCGCGAAGCAGATGTTA 60
|||||||| || |||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 1 ATGGGAGATGACGAAGCGCGTAGTTGGATTCGCGGAGACGAGACGGCGAAGCAGATGTTA 60
Query 61 TCAAGGGTTCTTAAAGACCGTGCATTCATGCTTCTTCCGCCTCTTCACCGTGTACCTTTA 120
|||||||||||||| |||||||| ||| ||||| ||||||| ||||||||||||||||||
Sbjct 61 TCAAGGGTTCTTAAGGACCGTGCGTTCCTGCTTATTCCGCCACTTCACCGTGTACCTTTA 120
Query 121 CGCGCCGGGAACGTAGTCGAGATCACCGGCGCATCTCCGTCTGCGAAAACTCAGATCCTG 180
|||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 121 CGCGCCGGGAACGTAGTCGAGATCACCGGCGCATCTACGTCAGCGAAAACTCAAATCCTG 180
Query 181 ATTCAAGCTGCGATCAGTTGCATTCTTCCTAAAACGTGGAACGGCATTCACTATGGAGGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCAAGCTGCGATCAGTTGCATTCTTCCTAAAACGTGGAACGGCATTCACTATGGAGGA 240
Query 241 TTAGGGAAACTGGTTTTGTTTCTCGATTTGGATTGTCGCTTTGATGTTCTCCGGTTATCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTAGGGAAACTGGTTTTGTTTCTCGATTTGGATTGTCGCTTTGATGTTCTCCGGTTATCT 300
Query 301 CAAATGCTCAAGCATCGTCTTCTTCAAGCTAACCGGTTAGGAAATGGAGCATGGTGGCAA 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 CAAATGCTCAAGCATCGTCTTCTTCAAGCTAACTGGTTAGGAAATGGAGCATGGTGGCAA 360
Query 361 CTTGAAGAGTCAAATGTTAAGAGTTGCATATCTGCACAAGAGAAGCCAAAGACTGTGTTT 420
||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 361 CTTGAGGAGTCAAATGTTAAGAGTTGCAAATCTGCAGAAGAGAAGACAAAGACTGTGTTT 420
Query 421 GATGAGGAGTTATATGTTTCATGCATGAAAAGGTTTCTGTATGTTCGTTGCTATGATAGT 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATGAGGAGTTATATGCTTCATGCATGAAAAGGTTTCTGTATGTTCGTTGCTATGATAGT 480
Query 481 CTTGAGCTTTTGTCCAGTCTCAAGACATTGCATTACCGGATCCGACAACAGGAAGCCTGT 540
||||| || |||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 481 CTTGAACTATTGTCCAGTCTCAAGACATTGCATTACCGGATCCAACAACAGGAGGCGTGT 540
Query 541 GGAAGTCAAGTCGGAGTGCTTATGATTGACAGCATTGGTGCTTTCCACTGGACTGATCGT 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 GGAAGTCAAGTCGGAGTGCTTATGATTGACAGCATTGGTGCTTTTCACTGGACTGATCGT 600
Query 601 CTATCATCATCATTGGCATTGGAGACACATAACAGGAAAAGTCTGTCCCTAACGAATGTG 660
|||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 601 CTATCATCATCATTGGCATTGGAGACACATAACAGGAAGAGTTTGTCCCTTACGAATGTG 660
Query 661 GTGGAGACGATAGTGCAAGAGTTGAAGAAGCTCCTGCAGGTGCATTCGCTGGTAGTACTT 720
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 661 GTGGAGACGATAGTGCAAGAGTTGAAGAAGCTCCTGCTGGTACATTCGCTGGTAGTACTT 720
Query 721 GCCACTAAGGTTACAATTTACGAAGAAAAGTACCCAGCAGTTGAGAATAATCGAAAGTTC 780
|||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| ||
Sbjct 721 GCCACTAAGGGTACAATTTACGAAGAAAAGTACCCAGCAAATGAGAATAATCGGAAGGTC 780
Query 781 TCCTCAAACGACGATTTTTCAGGGAACGCTGCAAGTAAAGCTCAGCAACCTCTAATTCGT 840
|||||||||||| ||||||||||||| | ||||||||||||||||||||||| | |||||
Sbjct 781 TCCTCAAACGACCATTTTTCAGGGAATGTTGCAAGTAAAGCTCAGCAACCTCCATTTCGT 840
Query 841 GAATTCATGCCTTCTTCTTGGCAGGCATTTGTAACACATAAGATAATCACACGAAAATCT 900
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 841 GAATTCATGCCTTCTTCTTGGCAGGCATTTGTAACACATAAGATCATCATACGAAAATCA 900
Query 901 GCTGATCATCGGTCTTTACAAACGGGGCAACAAAATTTGTCGGCATATTTACTTGAATGG 960
|||||| ||| ||||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 901 GCTGATTATCAGTCTTTACAAACGGGACAACAAAATTTGTTGGCATATTCACTTGAATGG 960
Query 961 CTACAACCGCAACTCAGTAGCATAGATCGATTCATAGTAGACGATGTAAGGAAACATACA 1020
||||||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||
Sbjct 961 TTACAACCGCAACTTAGTAGAATAGACCGCTTCATAGTAGACGATGTAAGGAAACTTACG 1020
Query 1021 ACCATTGCAAGTCTTGCAAAGCCATTTTACTCTAAACTATTACTCATATAT-T-GTTTTT 1078
||||| || || |||||||||||||||||||||||||||||| | ||| ||
Sbjct 1021 ACCAT---AA-------AA--CCATTTTACTCTAAACTATTACTCATATATATTGTTATT 1068
Query 1079 CCTGCTTCATCATCTCATGCAGTCCGGTATTGTCATTGTCTCGTGACCTAG 1129
|||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1069 CCTGCTTCATCATCTCATGCAGTCTGGTATTGTCATTGTCTCGTGACCTAG 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5