BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918286

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64890.1 | Symbols: PROPEP2 | elicitor peptide 2 precursor |...   357    4e-98


> AT5G64890.1 | Symbols: PROPEP2 | elicitor peptide 2 precursor 
| chr5:25934568-25935521 FORWARD LENGTH=584
Length=584

 Score =  357 bits (193),  Expect = 4e-98
 Identities = 291/337 (86%), Gaps = 11/337 (3%)
 Strand=Plus/Plus

Query  1    ATGGAGAAATTCGATAGACGAATCGAAGAAGAAACTTATCTATGTATTCCATTTCAAATT  60
            ||||||||||| |||| ||| |  |||||||||||||||||||| |||||| ||||  ||
Sbjct  79   ATGGAGAAATTAGATAAACGGAGGGAAGAAGAAACTTATCTATGGATTCCAGTTCAGTTT  138

Query  61   CTCGACCAAACTCTCATAGCTGTCTTGAAATGTCTTGGTCTTCTTTGCCCGACGGCGAAG  120
            ||||||||| ||||||||||||||||||||||| ||||||||||||| | | | ||||||
Sbjct  139  CTCGACCAAGCTCTCATAGCTGTCTTGAAATGTATTGGTCTTCTTTGTCAGCCAGCGAAG  198

Query  121  AAAACGGCGTCGCCGCCTGCGA-TTCTTAACCCGCCAGATGAACAAGAGGAAGACGATGG  179
            ||||| ||| || | || |  | || |||||| ||| || ||||||||||||||| ||||
Sbjct  199  AAAACTGCGCCGTCTCCGGTAACTT-TTAACCAGCCGGAGGAACAAGAGGAAGACTATGG  257

Query  180  TGTTGC-CATGAAAGACGATGATGTCGTTTTGTTGTCGACTAGAGG-CAAGAAGGCCAAA  237
            |||||| | |||||||||||||||||||| ||||| |   ||| || ||| |||||||||
Sbjct  258  TGTTGCTC-TGAAAGACGATGATGTCGTTGTGTTG-CT--TAG-GGACAACAAGGCCAAA  312

Query  238  GCAAAGAAAAGGGATAAAGAAAATCCTAGTTCAGGTCGTCCTGGCCAAACTAATA-TAAT  296
             |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |
Sbjct  313  TCAAAGAAAAGGGATAAAGAAAAGCCTAGTTCAGGTCGTCCTGGCCAAACTAATAGTG-T  371

Query  297  ACCCAACGCAGCAATACAAGTTTATGAGGAGGGTTAA  333
            ||||||||| ||||||||||||||| |||||| ||||
Sbjct  372  ACCCAACGCGGCAATACAAGTTTATAAGGAGGATTAA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5