BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918289
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64910.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1637 0.0
AT5G64920.1 | Symbols: CIP8 | COP1-interacting protein 8 | chr5... 106 6e-22
> AT5G64910.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G10010.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:25940711-25944114 FORWARD LENGTH=1547
Length=1547
Score = 1637 bits (886), Expect = 0.0
Identities = 1063/1148 (93%), Gaps = 14/1148 (1%)
Strand=Plus/Plus
Query 243 ggaggagggagagaaagaagaagaggcgaaagaagaccaggaagaggaaaaagaagaagC 302
|||||| ||| | |||||||||| ||||| |||||| || ||||||| ||||||||||
Sbjct 383 GGAGGA-GGA-A-AAAGAAGAAGCGGCGAGAGAAGA-CA--AAGAGGAGGAAGAAGAAGC 436
Query 303 GGCGAAACCTGATGAGAGTGCGAGCCAAAAGGAGGAGGCGAAAGGTGCGTCGTCTTCTCA 362
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 437 GGTGAAGCCTGATGAGAGTGCGAGCCAAAAGGAGGAGGCGAAAGGTGCGTCGTCTTCAGA 496
Query 363 GCCGAAGCTTCGTCGTGGTAAGCGTAAGAGAGTCACAAAGACGGAAGCGGAGAAG-AA-- 419
||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 497 ACCGCAGCTTCGTCGTGGTAAGCGTAAGAGAGGCACAAAGACGGAAGCGGAGAAGAAAGT 556
Query 420 ACCGACTCCGAGAGCCAAGAAGCGAGCTAAAACGACCAAGGCGCAAACAGCTGAGCCTGA 479
| ||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 557 ATCGACTCCTAGAGCCAAGAAGCGAGCCAAAACGACCAAGGCGCAAGCATCTGAGCCTGA 616
Query 480 GTACTTCGAAGAAAAGCGTAATCTGGAGGATTTGTGGAAGGATACATTTCCAGTGGGAAC 539
|||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 617 GTACTTCGAAGAGAAGCGTAATCTGGAGGATTTGTGGAAGGCTACATTTTCAGTGGGAAC 676
Query 540 GGAGTGGGACCAACAGGATGCAGTTTATGATTTCAACTGGGATTTTAAAAATCTTGAAGA 599
|||||||||||||||||||||| || |||| |||||||||||||||| ||||||||||||
Sbjct 677 GGAGTGGGACCAACAGGATGCACTTAATGAATTCAACTGGGATTTTACAAATCTTGAAGA 736
Query 600 AGCTCTGGAGGAAGGTGGAAAGCTCTATGGGAAGAAAGTCTATGTTTTTGGCTGCACTGA 659
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 737 AGCTCTGGAGGAAGGTGGAGAGCTCTATGGGAAGCAAGTCTATGTTTTTGGCTGCACTGA 796
Query 660 GTCTCATTCAGTCAATTACAAAAATGAGAAA-AAGGATGTCATTGTTCCTGCTGTCGTTT 718
|||||||||||||| ||||||| |||| ||| ||||||||| ||||||||| ||||||||
Sbjct 797 GTCTCATTCAGTCACTTACAAAGATGA-AAACAAGGATGTCCTTGTTCCTGTTGTCGTTT 855
Query 719 GTATTGAGTCATCTATTCCCCCGTCTGATAAGATAGGAGTTGCATCAGTTCAAGGAGAGG 778
||||||| ||| |||||||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 856 GTATTGATTCACCTATTCCCCCTTCTGATGAGATAGGAGTTGCATCGGTTCAAGGAGAGG 915
Query 779 TTGGGGAAATTATTCCAATGAAAAATATGAAAATGGATTGGGTTCCTTACGTCCCACTTG 838
|||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct 916 TTGGGGAAATTATTGCAATGAAAACTATGAAAATGGCTTGGGTTCCTTACATCCCACTTG 975
Query 839 AACAAAGGGATAGACAAGTTGATAGA-AAGAACTTTCCAGTTTTCATCTTGGGCTGTACT 897
|||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 976 AACAAAGGGATAGACAAGTTGATA-ATAAGAACTTTCCAATTTTCATCTTGGGCTGTACT 1034
Query 898 CAGAGAAGGTCTGCTCTCAAGCATTTGCCGGAGGATCGTGCTAAAAAATTCAACTATTGC 957
|||||||||||||||||||| |||||||| || ||||||| |||||| ||||||||||||
Sbjct 1035 CAGAGAAGGTCTGCTCTCAAACATTTGCCTGACGATCGTGTTAAAAAGTTCAACTATTGC 1094
Query 958 CTTCCTTACATTAACAACCCATTTAAGGTAGATGAATCTGAGCAGAGCACTGTGGTTCAA 1017
||||||||||| |||||||||| |||||| ||||| |||||| |||||||||||||| ||
Sbjct 1095 CTTCCTTACATCAACAACCCATATAAGGTTGATGACTCTGAGAAGAGCACTGTGGTTAAA 1154
Query 1018 ATAAGGTTCCCTTCTGAGCCACAAGTTGAATGTGAATATGACTGGGTGAAAAGCGACGTT 1077
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 1155 ATAATGTTCCCTTCTGAGCCACCAGTTGAATGTGAATATGACTGGGTGAAAAGCGTCATT 1214
Query 1078 GAGGATTTCACCGACAATCTGATCAAGGAGGAGGTATTACTACCGGAACAAAAGGATGCG 1137
||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||
Sbjct 1215 GAGGAATTCACCGACAGTCTGATCAATGAGGAGGTATTACTCCCGGAACAAAAGGTTGCG 1274
Query 1138 TTTGAGGAGTTTGTCAAAGAGCAAAGTAACATAGCTATGGCAGCTTATGACAGGGCACAA 1197
|| |||||||||||||||||| ||||| ||| |||||||||||||||||||| |||||||
Sbjct 1275 TTCGAGGAGTTTGTCAAAGAGAAAAGTGACAAAGCTATGGCAGCTTATGACACGGCACAA 1334
Query 1198 GAAGCCCGAGAGAAAGTAAAGGAAGGACTGAGCGAAGAAACAACAAAAGCTTATCAAGAA 1257
||||||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1335 GAAGCCCTAGAGAAAGCAAAGGAAGGACTGAGCGAAGAAACAAAAAAAGCCTATCAAGAA 1394
Query 1258 ATGAAGTTGTACAAGTTTTATCCATTGCCTTCACCAGACACACCCGACACTGCAGGAATT 1317
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1395 ATGAGGTTGTACAAGTTTTATCCATTGCCTTCACCAGACACACCCCACACTGCAGGAATT 1454
Query 1318 GAGAAGGTACTTCGGGAAGGCTCACGAAGTCCTGTAACCGTTACTCC-AAACCCAGGAAC 1376
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1455 GAGAAGGTACTTCGGGAAGGCTCACGAAGTCCTGTAACCGTTTCTCCTAAACCCAGGAAC 1514
Query 1377 CTTTTTGT 1384
||||||||
Sbjct 1515 CTTTTTGT 1522
Score = 438 bits (237), Expect = 6e-122
Identities = 275/293 (94%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 18 GAGAGGAGGTTCGCGAGGAGGCCGTAAAACTGGTGCGTCTTCGTCGGCGAGTAAGAACGA 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 GAGAGGAGGTTCGCGAGGAGGCCGTAAAACTGGTGCGTCTTCGTCGGCGAGTAAGAACGA 175
Query 78 TGATGCGGTGGTAGA-G--ACTACGACGCAGGAGACTCAGCCTACTCAGGAGACCGAGGA 134
||||||||||||||| | || |||||||||||||| ||||||||||||||||| |||||
Sbjct 176 TGATGCGGTGGTAGAGGCCACGACGACGCAGGAGACACAGCCTACTCAGGAGACAGAGGA 235
Query 135 AGCAGAGGCTAAGGTGGAATCTCCGGCGCCTgaggaggaggggaagaacgaagaagaggc 194
| | |||| ||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 236 AACGGAGGATAAGGTGGAATCTCCGGCGCCTGAGGAGGAGGGAAAAAACGAAGAAGAAGC 295
Query 195 gaacgagaatcaggaagaggaagcggcgaaggTTGAATCTAAGCCTGCggaggagggaga 254
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 296 GAACGAGAATCAGGAAGAGGAAGCGGCGAAGGTTGAATCTAAGGCTGCGGAGGAGGGAGG 355
Query 255 gaaagaagaagaggcgaaagaagaccaggaagaggaaaaagaagaagCGGCGA 307
||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 356 GAACGAAGAAGAGGCGAAAGAGGACAAGGAGGAGGAAAAAGAAGAAGCGGCGA 408
> AT5G64920.1 | Symbols: CIP8 | COP1-interacting protein 8 | chr5:25943888-25945442
REVERSE LENGTH=1555
Length=1555
Score = 106 bits (57), Expect = 6e-22
Identities = 62/64 (97%), Gaps = 1/64 (2%)
Strand=Plus/Minus
Query 1322 AGGTACTTCGGGAAGGCTCACGAAGTCCTGTAACCGTTACTCC-AAACCCAGGAACCTTT 1380
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1417 AGGTACTTCGGGAAGGCTCACGAAGTCCTGTAACCGTTTCTCCTAAACCCAGGAACCTTT 1358
Query 1381 TTGT 1384
||||
Sbjct 1357 TTGT 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5