BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg918304

Length=699
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65070.3 | Symbols: MAF4 | K-box region and MADS-box transcr...   510    6e-144
  AT5G65080.1 | Symbols: MAF5, AGL68 | K-box region and MADS-box ...   311    6e-84 


> AT5G65070.3 | Symbols: MAF4 | K-box region and MADS-box transcription 
factor family protein  | chr5:25992243-25996174 FORWARD 
LENGTH=1010
Length=1010

 Score =  510 bits (276),  Expect = 6e-144
 Identities = 336/364 (92%), Gaps = 8/364 (2%)
 Strand=Plus/Plus

Query  340  GATCTAGAAGaaaaaaaTCTTAATTATCTTTCACACAAGGAGTTGCTAGAAATAATCCAA  399
            |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct  407  GATCTAGAAGAAAAAACTCTTAATTATCTTTCGCACAAGGAGTTGCTAGAAACAATCCAA  466

Query  400  TGCAAGATTGAAGAAACGAAAAGCGATAATGTAAGTATAGATTGTCTAAAGTCCCTGGAA  459
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  467  TGCAAGATTGAAGAAGCGAAAAGCGATAATGTAAGTATAGATTGTCTAAAGTCCCTGGAA  526

Query  460  GAGCAGATCAAGACTGCTCTGTCTATAACTAGAGCTAGGAAGGCAGAACTCACGATGGAG  519
            |||||| ||||||||||||||||| ||||||||||||||||| ||||||| | |||||||
Sbjct  527  GAGCAGCTCAAGACTGCTCTGTCTGTAACTAGAGCTAGGAAGACAGAACTAATGATGGAG  586

Query  520  TTTGTGAAGACCCTTCAAGAGAAGGAGAAGCTGCTGATAGAAGAGAACCAG-GTTTTGAC  578
             |||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||| |||
Sbjct  587  CTTGTGAAGACCCATCAAGAGAAGGAGAAGCTGCTGAGAGAGGAGAACCAGAGTTT-GAC  645

Query  579  -AAGCCAGCTTAAAAAGATGGGGAAGATGAAGAAGTCTAG-GGAAACAGAGGATGCAAGA  636
             || |||||||| ||||||||||||||||||||||||| | |||| ||||||||||||||
Sbjct  646  TAA-CCAGCTTATAAAGATGGGGAAGATGAAGAAGTCT-GTGGAAGCAGAGGATGCAAGA  703

Query  637  GCAATGTCACCCGAAAATAGTTCCCGA-AACAAGCCACCGGAGACTCTCCTGCTGCTCAA  695
            ||||||||||| |||| ||| ||  || |||||||||||||||||||||||||| |||||
Sbjct  704  GCAATGTCACCGGAAAGTAGCTCT-GACAACAAGCCACCGGAGACTCTCCTGCTTCTCAA  762

Query  696  GTAA  699
            ||||
Sbjct  763  GTAA  766


 Score =  309 bits (167),  Expect = 2e-83
 Identities = 179/185 (97%), Gaps = 0/185 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAAGAAGAAAAGTGGAGATCAAACGAATTGAGAACAAAAGCTCTCGACAAGTTACT  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  68   ATGGGAAGAAGAAAAGTAGAGATCAAACGAATTGAGAACAAAAGCTCTCGACAAGTTACT  127

Query  61   TTCTGTAAGCGACGAAATGGACTCATGGAGAAAGCTCGTCAACTCTCAATTCTCTGTGAA  120
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  128  TTCTGTAAACGACGAAATGGTCTCATGGAGAAAGCTCGTCAACTCTCAATTCTTTGTGAA  187

Query  121  TCCTCCGTCGCTCTTATCATCATCTCTGCCACCGGAAGACTCTACAGCTTCTCCTCTGGC  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  188  TCCTCCGTCGCTCTTATCATCATCTCTGCCACCGGAAGACTCTACAGCTTCTCCTCAGGT  247

Query  181  GATAG  185
            |||||
Sbjct  248  GATAG  252


 Score =  102 bits (55),  Expect = 4e-21
 Identities = 57/58 (98%), Gaps = 0/58 (0%)
 Strand=Plus/Plus

Query  186  CATGGCCAAGATCCTCAGTCGTTATGAATTACAACAGGCTGATGATCTTAAAACCTTG  243
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  349  CATGGCCAAGATCCTCAGTCGTTATGAATTAGAACAGGCTGATGATCTTAAAACCTTG  406


> AT5G65080.1 | Symbols: MAF5, AGL68 | K-box region and MADS-box 
transcription factor family protein  | chr5:25997504-26002465 
FORWARD LENGTH=1018
Length=1018

 Score =  311 bits (168),  Expect = 6e-84
 Identities = 219/244 (90%), Gaps = 2/244 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAGAAGAAAAGTGGAGATCAAACGAATTGAGAACAAAAGCTCTCGACAAGTTACT  60
            ||||||||||||| ||| |||||||||||||||||||||||||||  | ||||||| |||
Sbjct  168  ATGGGAAGAAGAAGAGTAGAGATCAAACGAATTGAGAACAAAAGCAGTAGACAAGTCACT  227

Query  61   TTCTGTAAGCGACGAAATGGACTCATGGAGAAAGCTCGTCAACTCTCAATTCTCTGTGAA  120
            ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  228  TTCTGTAAGAGACGAAATGGTCTCATGGAGAAAGCTCGTCAACTCTCAATTCTCTGTGGA  287

Query  121  TCCTCCGTCGCTCTTATCATCATCTCTGCCACCGG-AAGACTCTACAGCTTCTCCTCTGG  179
            ||||||||||||||| ||||| ||||| ||||||| || |||||||| || |||||| ||
Sbjct  288  TCCTCCGTCGCTCTTTTCATCGTCTCTTCCACCGGCAA-ACTCTACAACTCCTCCTCCGG  346

Query  180  CGATAGCATGGCCAAGATCCTCAGTCGTTATGAATTACAACAGGCTGATGATCTTAAAAC  239
            ||| ||||||||||||||| ||||||||| | || ||||||| |||||||||| | ||||
Sbjct  347  CGACAGCATGGCCAAGATCATCAGTCGTTTTAAAATACAACAAGCTGATGATCCTGAAAC  406

Query  240  CTTG  243
            ||||
Sbjct  407  CTTG  410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33857815078


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5