BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg918304 Length=699 Score E Sequences producing significant alignments: (Bits) Value AT5G65070.3 | Symbols: MAF4 | K-box region and MADS-box transcr... 510 6e-144 AT5G65080.1 | Symbols: MAF5, AGL68 | K-box region and MADS-box ... 311 6e-84 > AT5G65070.3 | Symbols: MAF4 | K-box region and MADS-box transcription factor family protein | chr5:25992243-25996174 FORWARD LENGTH=1010 Length=1010 Score = 510 bits (276), Expect = 6e-144 Identities = 336/364 (92%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 340 GATCTAGAAGaaaaaaaTCTTAATTATCTTTCACACAAGGAGTTGCTAGAAATAATCCAA 399 |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 407 GATCTAGAAGAAAAAACTCTTAATTATCTTTCGCACAAGGAGTTGCTAGAAACAATCCAA 466 Query 400 TGCAAGATTGAAGAAACGAAAAGCGATAATGTAAGTATAGATTGTCTAAAGTCCCTGGAA 459 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 467 TGCAAGATTGAAGAAGCGAAAAGCGATAATGTAAGTATAGATTGTCTAAAGTCCCTGGAA 526 Query 460 GAGCAGATCAAGACTGCTCTGTCTATAACTAGAGCTAGGAAGGCAGAACTCACGATGGAG 519 |||||| ||||||||||||||||| ||||||||||||||||| ||||||| | ||||||| Sbjct 527 GAGCAGCTCAAGACTGCTCTGTCTGTAACTAGAGCTAGGAAGACAGAACTAATGATGGAG 586 Query 520 TTTGTGAAGACCCTTCAAGAGAAGGAGAAGCTGCTGATAGAAGAGAACCAG-GTTTTGAC 578 |||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||| ||| Sbjct 587 CTTGTGAAGACCCATCAAGAGAAGGAGAAGCTGCTGAGAGAGGAGAACCAGAGTTT-GAC 645 Query 579 -AAGCCAGCTTAAAAAGATGGGGAAGATGAAGAAGTCTAG-GGAAACAGAGGATGCAAGA 636 || |||||||| ||||||||||||||||||||||||| | |||| |||||||||||||| Sbjct 646 TAA-CCAGCTTATAAAGATGGGGAAGATGAAGAAGTCT-GTGGAAGCAGAGGATGCAAGA 703 Query 637 GCAATGTCACCCGAAAATAGTTCCCGA-AACAAGCCACCGGAGACTCTCCTGCTGCTCAA 695 ||||||||||| |||| ||| || || |||||||||||||||||||||||||| ||||| Sbjct 704 GCAATGTCACCGGAAAGTAGCTCT-GACAACAAGCCACCGGAGACTCTCCTGCTTCTCAA 762 Query 696 GTAA 699 |||| Sbjct 763 GTAA 766 Score = 309 bits (167), Expect = 2e-83 Identities = 179/185 (97%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 1 ATGGGAAGAAGAAAAGTGGAGATCAAACGAATTGAGAACAAAAGCTCTCGACAAGTTACT 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 68 ATGGGAAGAAGAAAAGTAGAGATCAAACGAATTGAGAACAAAAGCTCTCGACAAGTTACT 127 Query 61 TTCTGTAAGCGACGAAATGGACTCATGGAGAAAGCTCGTCAACTCTCAATTCTCTGTGAA 120 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 128 TTCTGTAAACGACGAAATGGTCTCATGGAGAAAGCTCGTCAACTCTCAATTCTTTGTGAA 187 Query 121 TCCTCCGTCGCTCTTATCATCATCTCTGCCACCGGAAGACTCTACAGCTTCTCCTCTGGC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 188 TCCTCCGTCGCTCTTATCATCATCTCTGCCACCGGAAGACTCTACAGCTTCTCCTCAGGT 247 Query 181 GATAG 185 ||||| Sbjct 248 GATAG 252 Score = 102 bits (55), Expect = 4e-21 Identities = 57/58 (98%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 186 CATGGCCAAGATCCTCAGTCGTTATGAATTACAACAGGCTGATGATCTTAAAACCTTG 243 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 349 CATGGCCAAGATCCTCAGTCGTTATGAATTAGAACAGGCTGATGATCTTAAAACCTTG 406 > AT5G65080.1 | Symbols: MAF5, AGL68 | K-box region and MADS-box transcription factor family protein | chr5:25997504-26002465 FORWARD LENGTH=1018 Length=1018 Score = 311 bits (168), Expect = 6e-84 Identities = 219/244 (90%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 1 ATGGGAAGAAGAAAAGTGGAGATCAAACGAATTGAGAACAAAAGCTCTCGACAAGTTACT 60 ||||||||||||| ||| ||||||||||||||||||||||||||| | ||||||| ||| Sbjct 168 ATGGGAAGAAGAAGAGTAGAGATCAAACGAATTGAGAACAAAAGCAGTAGACAAGTCACT 227 Query 61 TTCTGTAAGCGACGAAATGGACTCATGGAGAAAGCTCGTCAACTCTCAATTCTCTGTGAA 120 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 228 TTCTGTAAGAGACGAAATGGTCTCATGGAGAAAGCTCGTCAACTCTCAATTCTCTGTGGA 287 Query 121 TCCTCCGTCGCTCTTATCATCATCTCTGCCACCGG-AAGACTCTACAGCTTCTCCTCTGG 179 ||||||||||||||| ||||| ||||| ||||||| || |||||||| || |||||| || Sbjct 288 TCCTCCGTCGCTCTTTTCATCGTCTCTTCCACCGGCAA-ACTCTACAACTCCTCCTCCGG 346 Query 180 CGATAGCATGGCCAAGATCCTCAGTCGTTATGAATTACAACAGGCTGATGATCTTAAAAC 239 ||| ||||||||||||||| ||||||||| | || ||||||| |||||||||| | |||| Sbjct 347 CGACAGCATGGCCAAGATCATCAGTCGTTTTAAAATACAACAAGCTGATGATCCTGAAAC 406 Query 240 CTTG 243 |||| Sbjct 407 CTTG 410 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33857815078 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5