BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918319
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65210.2 | Symbols: TGA1 | bZIP transcription factor family ... 1829 0.0
AT5G10030.1 | Symbols: TGA4, OBF4 | TGACG motif-binding factor ... 979 0.0
> AT5G65210.2 | Symbols: TGA1 | bZIP transcription factor family
protein | chr5:26058545-26061052 FORWARD LENGTH=1896
Length=1896
Score = 1829 bits (990), Expect = 0.0
Identities = 1068/1107 (96%), Gaps = 0/1107 (0%)
Strand=Plus/Plus
Query 1 ATGAATTCGACATCGACACATTTTGTGCCACCGAGAAGAGTTGGTATATACGAACCTGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ATGAATTCGACATCGACACATTTTGTGCCACCGAGAAGAGTTGGTATATACGAACCTGTC 546
Query 61 CATCAATTCGGTATGTGGGGGGAAAGTTTCAAGAGCAATATTGGCAATGGGAATATGAAC 120
||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||
Sbjct 547 CATCAATTCGGTATGTGGGGGGAGAGTTTCAAAAGCAATATTAGCAATGGGACTATGAAC 606
Query 121 ACACCAAACCACATTATTATACCGAATAATCAGAAACTAGACAACAACTTGTCAGAGGAT 180
|||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 607 ACACCAAACCACATAATAATACCGAATAATCAGAAACTAGACAACAACGTGTCAGAGGAT 666
Query 181 ACTTCCCATGGAACAGCAGGAACTCCTCACATGTTTGATCAAGAAGCCTCTACGTCTAGA 240
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 667 ACTTCCCATGGAACAGCAGGAACTCCTCACATGTTCGATCAAGAAGCTTCAACGTCTAGA 726
Query 241 CATCCCGATAAGATACAGAGACGGCTTGCTCAAAACCGCGAGGCTGCTAGGAAAAGTCGC 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CATCCCGATAAGATACAAAGACGGCTTGCTCAAAACCGCGAGGCTGCTAGGAAAAGTCGC 786
Query 301 TTGCGCAAGAAGGCTTATGTTCAGCAGCTGGAAACAAGCCGGTTGAAGCTAATTCAATTA 360
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 787 TTGCGCAAGAAGGCTTATGTTCAGCAACTGGAAACAAGCAGGTTGAAGCTAATTCAATTA 846
Query 361 GAGCAAGAACTCGATCGTGCTAGACAACAGGGATTCTATGTGGGGAATGGAATAGATACT 420
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 847 GAGCAAGAACTCGATCGTGCTAGACAACAGGGATTCTATGTAGGAAACGGAATAGATACT 906
Query 421 AATTCTCTCGGATTTTCGGAAACCATGAATCCAGGGATTGCTGCATTTGAAATGGAATAT 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AATTCTCTCGGTTTTTCGGAAACCATGAATCCAGGGATTGCTGCATTTGAAATGGAATAT 966
Query 481 GGACATTGGGTTGAAGAACAGAACCGACAGATATGCGAACTGAGAACGGTTTTACACGGA 540
|||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||
Sbjct 967 GGACATTGGGTTGAAGAACAGAACAGACAGATATGTGAACTAAGAACAGTTTTACACGGA 1026
Query 541 CACATTAACGATATTGAGCTTCGTTTGCTAGTCGAAAACGCCATGAAACATTACTTTGAG 600
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1027 CACATTAACGATATCGAGCTTCGTTCGCTAGTCGAAAACGCCATGAAACATTACTTTGAG 1086
Query 601 CTTTTCCGGATGAAATCATCTGCTGCAAAAGCCGATGTCTTCTTCGTCATGTCAGGGATG 660
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1087 CTTTTCCGGATGAAATCGTCTGCTGCCAAAGCCGATGTCTTCTTCGTCATGTCAGGGATG 1146
Query 661 TGGAGAACTTCAGCAGAGCGGTTTTTCTTGTGGATTGGCGGATTTCGACCCTCGGATCTT 720
||||||||||||||||| || || ||||| ||||||||||||||||||||||| ||||||
Sbjct 1147 TGGAGAACTTCAGCAGAACGATTCTTCTTATGGATTGGCGGATTTCGACCCTCCGATCTT 1206
Query 721 CTCAAGGTTCTTTTGCCACATTTTGATATCTTGACGGATCAACAACTTCTAGATGTATGC 780
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1207 CTCAAGGTTCTTTTGCCACATTTTGATGTCTTGACGGATCAACAACTTCTAGATGTATGC 1266
Query 781 AATCTAAAACAATCGTGTCAGCAAGCAGAAGACGCGTTGACTCAAGGTATGGAGAAGCTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 AATCTAAAACAATCGTGTCAGCAAGCAGAAGACGCGTTGACTCAAGGTATGGAGAAGCTG 1326
Query 841 CAACACACCCTTGCGGACTGCGTTGCAGCGGGACAACTCGGTGAAGGAAGTTACATTCCT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 CAACACACCCTTGCGGACTGCGTTGCAGCGGGACAACTCGGTGAAGGAAGTTACATTCCT 1386
Query 901 CAGGTGAATTCTGCAATGGAGAGATTAGAAGCTTTGGTCAGTTTTGTTAATCAGGCTGAT 960
|||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1387 CAGGTGAATTCTGCTATGGATAGATTAGAAGCTTTGGTCAGTTTCGTAAATCAGGCTGAT 1446
Query 961 CACTTGAGACATGAAACATTGCAACAAATGTATCGGATCTTGACCACACGACAAGCGGCT 1020
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1447 CACTTGAGACATGAAACATTGCAACAAATGTATCGGATATTGACAACGCGACAAGCGGCT 1506
Query 1021 CGAGGATTATTAGCTCTTGGTGAGTATTTTCAACGGCTTAGAGCCTTGAGCTCAAGTTGG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 CGAGGATTATTAGCTCTTGGTGAGTATTTTCAACGGCTTAGAGCCTTGAGCTCAAGTTGG 1566
Query 1081 GCGACTCGACATCGTGAACCAACGTAG 1107
|| ||||||||||||||||||||||||
Sbjct 1567 GCAACTCGACATCGTGAACCAACGTAG 1593
> AT5G10030.1 | Symbols: TGA4, OBF4 | TGACG motif-binding factor
4 | chr5:3137323-3140252 REVERSE LENGTH=1675
Length=1675
Score = 979 bits (530), Expect = 0.0
Identities = 932/1122 (83%), Gaps = 44/1122 (4%)
Strand=Plus/Plus
Query 1 ATGAATTCGACATCGACACATTTTGTGCCACCGAGAAGAGTTGGTA-TATACGAACCTGT 59
|||||| | || |||||||||||||| ||||||||||| ||| | | | ||||| ||| |
Sbjct 256 ATGAATACAACCTCGACACATTTTGTTCCACCGAGAAG-GTTTGAAGTTTACGAGCCTCT 314
Query 60 CCATCAATTCGGTATGTGGGGGGAAAGTTTCAAGAGCAATATTGGCAATGGGAATATGAA 119
| | ||| |||||||||||| ||||||||||||| | | | ||| | | | ||| |
Sbjct 315 CAACCAAATCGGTATGTGGGAAGAAAGTTTCAAGAAC-A-A-TGG--A---G-ACATGTA 365
Query 120 CACACCAAACCAC-ATTATTATACCGAATAATCAGAAACTAGA-CA-ACAACTTGTCAGA 176
|| || | | || || || |||| ||| | |||| | | || ||| |||||||||
Sbjct 366 TACGCC-TGGCTCTATCATAATCCCGACTAA-C-GAAA--A-ACCAGACAGCTTGTCAGA 419
Query 177 GGATACTTCCCATGGAACAGCAGGAACTCCTCACATGTTTGATCAAGAAGCCTCTACGTC 236
||||||||| ||||| |||| |||||||||||||| |||||| ||||| || || || ||
Sbjct 420 GGATACTTCTCATGGGACAGAAGGAACTCCTCACAAGTTTGACCAAGAGGCTTCCACATC 479
Query 237 TAGACATCCCGATAAGATACAGAGACGGCTTGCTCAAAACCGCGAGGCTGCTAGGAAAAG 296
||||||||| ||||||||||||||| |||| || || || || ||||| |||||||||||
Sbjct 480 TAGACATCCTGATAAGATACAGAGAAGGCTAGCACAGAATCGAGAGGCAGCTAGGAAAAG 539
Query 297 TCGCTTGCGCAAGAAGGCTTATGTTCAGCAGCTGGAAACAAGCCGGTTGAAGCTAATTCA 356
||| ||||||||||| ||||||||||||||||| || || |||||||| |||||||||||
Sbjct 540 TCGTTTGCGCAAGAAAGCTTATGTTCAGCAGCTAGAGACTAGCCGGTTAAAGCTAATTCA 599
Query 357 ATTAGAGCAAGAACTCGATCGTGCTAGACAACAGGGATTCTATGTGGGGAATGGAATAGA 416
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 600 TTTAGAGCAAGAACTCGATCGTGCTAGACAACAGGGTTTCTATGTGGGGAACGGAGTAGA 659
Query 417 TACTAATTCTCTCGGATTT-TCGGA-AACCATGAA-TCCAGGGATTGCTGCATTTGAAAT 473
||| ||| |||| | ||| || || ||| |||| || |||||||| ||||||||| ||
Sbjct 660 TACCAATGCTCTTAG-TTTCTCAGATAAC-ATGAGCTC-AGGGATTGTTGCATTTGAGAT 716
Query 474 GGAATATGGACATTGGGTTGAAGAACAGAACCGACAGATATGCGAACTGAGAACGGTTTT 533
|||||||||||||||||| |||||||||||| | || ||||| ||||| |||||||||||
Sbjct 717 GGAATATGGACATTGGGTGGAAGAACAGAACAGGCAAATATGTGAACTAAGAACGGTTTT 776
Query 534 ACACGGACACA-TTAACGATATTGAGCTTCGTT-TGCTAGTCGAAAACGCCATGAAACAT 591
||| ||||| | ||| ||||| |||||||||| | |||||||| || ||||||||||||
Sbjct 777 ACATGGACA-AGTTAGTGATATAGAGCTTCGTTCT-CTAGTCGAGAATGCCATGAAACAT 834
Query 592 TACTTTGAGCTTTTCCGGATGAAATCATCTGCTGCAAAAGCCGATGTCTTCT-TCGTCAT 650
|||||| | || ||||| ||||| ||| | ||||||||| |||||| |||| | |||||
Sbjct 835 TACTTTCAACTCTTCCGAATGAAGTCAGCCGCTGCAAAAATCGATGTTTTCTAT-GTCAT 893
Query 651 GTCAGGGATGTGGAGAACTTCAGCAGAGCGGTTTTTCTTGTGGATTGGCGGATTTCGACC 710
||| || ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 894 GTCCGGAATGTGGAAAACTTCAGCAGAGCGGTTTTTCTTGTGGATAGGCGGATTTAGACC 953
Query 711 CTCGGATCTTCTCAAGGTTCTTTTGCCACATTTTGATATCTT-GACGGATCAACAACTTC 769
||| || |||||||||||||| || || ||||||||| ||| ||||||||||||||||
Sbjct 954 CTCAGAGCTTCTCAAGGTTCTGTTACCGCATTTTGATC-CTTTGACGGATCAACAACTTT 1012
Query 770 TAGATGTATGCAATCTAAAACAATCGTGTCAGCAAGCAGAAGACGCGTTGA-CTCAAGGT 828
| |||||||| ||||| | ||||| ||||| ||||||||||| ||||| | | ||||||
Sbjct 1013 TGGATGTATGTAATCTGAGGCAATCATGTCAACAAGCAGAAGATGCGTT-ATCCCAAGGT 1071
Query 829 ATGGAGAAGCTGCAACACACCCTT-GCGGACTGCGTTGCAGC-GGGACAACTCGGTGAAG 886
|||||||| |||||||| || || || || | || ||||| |||| |||| |||||||
Sbjct 1072 ATGGAGAAACTGCAACATACA-TTAGCAGAGAGTGTAGCAGCCGGGA-AACTTGGTGAAG 1129
Query 887 GAAGTTACATTCCTCAGGTGAATTCTGCAATGGAGAGATTAGAAGCTTTGGTCAGTTTTG 946
||||||| |||||||| ||| || ||| ||||||||||| || ||||||||||| ||||
Sbjct 1130 GAAGTTATATTCCTCAAATGACTTGTGCTATGGAGAGATTGGAGGCTTTGGTCAGCTTTG 1189
Query 947 TTAATCAGGCTGATCA-CTTGAGACATGAAACATTGCAACAAATGTATCGGATCTTGACC 1005
| ||||| |||||||| || ||||||||| ||||||||||| ||| |||||||||| |||
Sbjct 1190 TAAATCAAGCTGATCATCT-GAGACATGAGACATTGCAACAGATGCATCGGATCTTAACC 1248
Query 1006 ACACGACAAGCGGCTCGAGGATTATTAGCTCTT-GGTGAGTATTTTCAACGGCTTAGAGC 1064
|| |||||||||||| |||| || ||||| || || |||||||| ||| ||||| ||||
Sbjct 1249 ACGCGACAAGCGGCTAGAGGTTTGTTAGCA-TTAGGGGAGTATTTCCAAAGGCTTCGAGC 1307
Query 1065 CTTGAGCTCAAGTTGGGCGACTCGACATCGTGAACCAACGTA 1106
||||| || ||||||||| || | || ||||||||||||||
Sbjct 1308 TTTGAGTTCGAGTTGGGCGGCTAGGCAACGTGAACCAACGTA 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5