BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg918339
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65420.3 | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141470-26... 1029 0.0
AT5G10440.1 | Symbols: CYCD4;2 | cyclin d4;2 | chr5:3280516-328... 520 1e-146
> AT5G65420.3 | Symbols: CYCD4;1 | CYCLIN D4;1 | chr5:26141470-26143993
REVERSE LENGTH=1322
Length=1322
Score = 1029 bits (557), Expect = 0.0
Identities = 633/668 (95%), Gaps = 11/668 (2%)
Strand=Plus/Plus
Query 260 AGGCTTGT-AAGGAACACCAGTTTGGACCATTGTGTTTTTGCTTATCAATGAACTACTTG 318
|||||||| || | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 533 AGGCTTGTGAA-GTACACCAGTTTGGACCATTGTGTTTTTGCTTAGCAATGAACTACTTG 591
Query 319 GATCGATTCTTATCGGTTCATGATCTGCCTAGTGGCAAAAGTTGGATATTGCAGTTGTTG 378
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 592 GATCGATTCTTATCGGTTCATGATTTGCCTAGTGGCAAAGGTTGGATATTGCAGTTGTTG 651
Query 379 GATGTGGCTTGTTTATCCTTGGCAGCCAAAATTGAAGAAACTGAAGTTCCAATGTTAATT 438
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 652 GCTGTGGCTTGTTTATCATTGGCAGCCAAAATTGAAGAAACTGAAGTTCCAATGTTGATA 711
Query 439 GAACTTCAGGTTGGAGATCCTCAGTTTGTGTTTGAGGCGAAATCAGTCCAAAGAATGGAA 498
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 712 GATCTTCAGGTTGGAGATCCTCAGTTTGTGTTTGAGGCTAAATCAGTCCAAAGAATGGAG 771
Query 499 CTTTTGGTGCTGAACAGATTGAAATGGAGATTGAGAGCAATAACTCCATGCTCATACATA 558
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CTTTTGGTGTTGAACAAATTGAAATGGAGATTGAGAGCAATAACTCCATGCTCATACATA 831
Query 559 AGATATTTCTTGAGAAAGATGAGTAAATGTGATCAAGAACCATCCAACACATTGATATCC 618
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGATATTTCCTGAGAAAGATGAGTAAATGTGATCAAGAACCATCCAACACATTGATATCT 891
Query 619 AGATCACTACAAGTGATAGCCAGCACAACCAAAGGTATTGACTTTATGGAGTTTAGACCT 678
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 892 AGATCATTACAAGTGATAGCCAGCACAACCAAAGGTATTGACTTTTTGGAGTTTAGACCT 951
Query 679 TCTGAAGTTGCTGCTGCTGTGGCACTTTCTGTTTCTGGAGAATTGCACACAGTACACTTT 738
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 952 TCTGAAGTTGCTGCTGCTGTGGCACTTTCTGTTTCTGGAGAATTGCAGAGAGTACACTTT 1011
Query 739 GACAACTCT-CCT-CT-T--T-T---CTCACTACTTCAAAAGGAGAGAGTGAAGAAGATT 789
||||||||| ||| || | | | |||||||||||||||||||||||||||||||||
Sbjct 1012 GACAACTCTTCCTTCTCTCCTCTTTTCTCACTACTTCAAAAGGAGAGAGTGAAGAAGATA 1071
Query 790 GGGGAAATGATACAGAGTGATGGTTCAGGCTTATGTTCACAAACACCCAATGGGGTTTTA 849
|||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1072 GGGGAAATGATAGAGAGTGATGGCTCAGACTTATGTTCACAAACACCCAATGGGGTTTTA 1131
Query 850 GAAGTATCAGCTTGTTGTTTCAGCTTTAAGACCCATGATTCTTCTTCTTCTTATACACAT 909
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GAAGTATCGGCTTGTTGTTTCAGCTTTAAGACCCATGATTCTTCTTCTTCTTATACACAT 1191
Query 910 CTTTCTTA 917
||||||||
Sbjct 1192 CTTTCTTA 1199
Score = 300 bits (162), Expect = 2e-80
Identities = 241/274 (88%), Gaps = 26/274 (9%)
Strand=Plus/Plus
Query 1 ATGGCAGAGACAGAGAATCTAGAACTGAGTCTTTTATGTACAGAGACCAACGTTGATGAT 60
||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 244 ATGGCAGAG---GAGAATCTAGAACTGAGTCTTTTATGTACAGAGAGCAACG-T--TGAT 297
Query 61 GATGAAGACAAGGGCATGATTGTTGACAAAACTCC----G-----T---TTCCTCAGATG 108
||| | ||||||||||||||||| ||||||| | | |||||||||||
Sbjct 298 GAT---G---AGGGCATGATTGTTGACGAAACTCCGATTGAAATTTCGATTCCTCAGATG 351
Query 109 GGTTTATCTCAATCGGAGAGTGAAGAGTTTATCA-GAGAGATGGTGGAGAAGGAGAAGCA 167
||||| ||||||||||||||||| ||| |||||| | |||||||||||||||||||||||
Sbjct 352 GGTTTTTCTCAATCGGAGAGTGAGGAGATTATCATG-GAGATGGTGGAGAAGGAGAAGCA 410
Query 168 GCATTTGCCAAGTGATGATTACATCAAGAGACTCAGAAGTGGAGATTTGGATTTGAATGT 227
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 411 GCATTTGCCAAGTGATGATTACATCAAGAGACTTAGAAGTGGAGATTTGGATTTGAATGT 470
Query 228 TGGAAGAAGAGAAGCCCTCAATTGGATTTGGAAG 261
|||||||||||| |||||||||||||||||||||
Sbjct 471 TGGAAGAAGAGATGCCCTCAATTGGATTTGGAAG 504
> AT5G10440.1 | Symbols: CYCD4;2 | cyclin d4;2 | chr5:3280516-3282411
REVERSE LENGTH=1061
Length=1061
Score = 520 bits (281), Expect = 1e-146
Identities = 608/759 (80%), Gaps = 49/759 (6%)
Strand=Plus/Plus
Query 102 TCAGATGGGTTTAT-CTCAATCGGAGAGTGAAGAGTTTATCAGAGAGATGGTGGAGAAGG 160
|||||||||||| | ||| | |||||| |||||| | | ||||||||| | ||||| |
Sbjct 150 TCAGATGGGTTT-TCCTC--T-GGAGAGCGAAGAGATCGTTAGAGAGATGATTGAGAAAG 205
Query 161 AGAAG-CAGCATTTGCCAAGTGATGATTACATCAAGAGACTCAGAAGTGGAGATTTGGAT 219
|| || || || | || || ||||||||| |||||||||| |||| ||||||||||||
Sbjct 206 AG-AGACAACACTCACCGAGAGATGATTACCTCAAGAGACTGAGAAACGGAGATTTGGAT 264
Query 220 TTGAATGTTGGAAGAAGAGAAGCCCTCAATTGGATTTGGAAGGCTTGTAAGGAACACCAG 279
|| |||| | |||| ||||||| ||||||||||||||| ||| |||||| ||
Sbjct 265 TTCAATG-T--CAGAATCCAAGCCCTTGGTTGGATTTGGAAGGCCTGTGAGGAACTTCAA 321
Query 280 TTTGGACCATTGTGTTTTTGCT-TATCAATGAACTACTTGGATCGATTCTTATCGGTTCA 338
||||||||||||||| | || | || ||||||||||||||||||| |||||||| |||||
Sbjct 322 TTTGGACCATTGTGTATATG-TCTAGCAATGAACTACTTGGATCGTTTCTTATCTGTTCA 380
Query 339 TGATC-TGCCTAGTGGCAAAAG-TTGGATAT-TGCAGTTGTTGGATGTGGCTTGTTTATC 395
||| | | |||||||| ||||| ||||| | | || ||||||| ||| |||||||||||
Sbjct 381 TGA-CTTACCTAGTGG-AAAAGCTTGGA-CTGTACAATTGTTGGCTGTTGCTTGTTTATC 437
Query 396 CTTGGCAGCCAAAATTGAAGAAACTGAA-GTTCCA-ATGTTAATTG-AACTTCAGGTTGG 452
|||||||| ||||| || |||||| || |||||| | ||||| || | || ||||||||
Sbjct 438 ATTGGCAGCTAAAATAGAGGAAACT-AATGTTCCAGA-GTTAA-TGCAGCTGCAGGTTGG 494
Query 453 AGATCCTCA-GTTTGTGTTTGAGGCGAAATCAGTCCAAAGAATGGAACTTTTGGTGCTGA 511
|| ||| || ||| ||||||||||| |||||||| ||||| ||||||||||||||| |||
Sbjct 495 AGCTCC-CATGTTCGTGTTTGAGGCTAAATCAGTTCAAAGGATGGAACTTTTGGTGTTGA 553
Query 512 ACAG-ATTGAAATGGAGATTGA-GAGCAATAACTCCATGCTCATACATAAGATATTTCTT 569
|| | ||||| |||||| || | | ||| | || || ||||| ||| | ||||| ||| |
Sbjct 554 AC-GTATTGAGATGGAGGTT-ACGGGCAGTGACACCGTGCTCTTACGTTAGATACTTCCT 611
Query 570 GAGAAAGATGAGTAAATGTGATCAAGAACCATCCA-A-CACATTGATATCCAGATCACTA 627
||| ||||| | | | ||||||||||||| || | || |||| || | |||||||||
Sbjct 612 GAGTAAGATCAATGGCTATGATCAAGAACCA--CATAGCAGATTGGTAACTAGATCACTA 669
Query 628 CAAGTGATAGCCAGCACAACCAAAGGTATTGACTT-TATGGAGTTTAGACCTTCTGA-AG 685
||||||||||||||||||||||||||||||||||| | ||||||||||| |||| || |
Sbjct 670 CAAGTGATAGCCAGCACAACCAAAGGTATTGACTTCT-TGGAGTTTAGAGCTTCAGAGA- 727
Query 686 TTGCTGCTGCTGTGGCACTTTCTGTTTCTGGAGAATTGCACACAGTACACTTTGACAACT 745
|||||||||| || || |||||||||||||||||| ||| | ||| || | ||
Sbjct 728 TTGCTGCTGCAGTTGCTCTTTCTGTTTCTGGAGAA---CACTTTG-ACAAATTCTC--CT 781
Query 746 -CTCCTCTT--TTCTCACTACTTCAAAAGGAGAGAGTGAAGAAGATTGGGGAAATGATAC 802
||| |||| |||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 782 TCTCTTCTTCCTTCTCAAGCCTTGAAAAGGAGAGAGTGAAGAAGATTGGTGAAATGATAG 841
Query 803 AGAGTGATGGTTCAGGCTT-ATGTTCACAAACACCCAAT 840
|||| || || ||| | || | ||||||||||||| |||
Sbjct 842 AGAGAGACGGATCAAG-TTCAAGTTCACAAACACCAAAT 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5